Table 1.
Transcriptomes used for phylogenetic reconstruction in this study.
| Species | Clade | NCBI SRA # |
|---|---|---|
| Anacampseros kurtzii | Outgroup | SRR6435355 (Bioproject: PRJNA428216) |
| Ariocarpus retusus | Cactoideae | SRR7905834 |
| Astrophytum myriostigma | Cactoideae | SRR7905836 |
| Carnegiea gigantea | Cactoideae | SRR5036296 |
| Copiapoa desertorum | Cactoideae | SRR7905838 (Bioproject: PRJNA493215) |
| Coryphantha maiz tablasensis | Cactoideae | SRR7905839 (Bioproject: PRJNA493215) |
| Echinocereus pectinatus | Cactoideae | SRR1698109 (Bioproject: PRJNA269655) |
| Echinopsis aurea | Cactoideae | SRR7905840 (Bioproject: PRJNA493215) |
| Eriosyce wagenknechtii | Cactoideae | SRR7905831 (Bioproject: PRJNA493215) |
| Ferocactus latispinus | Cactoideae | SRR7905830 (Bioproject: PRJNA493215) |
| Grusonia bradtiana | Opuntioideae | SRR7905852 (Bioproject: PRJNA493215) |
| Gymnocalycium mihanovichii | Cactoideae | SRR7905853 (Bioproject: PRJNA493215) |
| Hylocereus undatus | Cactoideae | SRR11603181 |
| Leuenbergeria bleo | Leuenbergeria + Pereskia | SRR1698112 |
| Leuenbergeria guamacho | Leuenbergeria + Pereskia | SRR7905854 (Bioproject: PRJNA493215) |
| Maihuenia poeppigii | Maihuenia | SRR7905849 (Bioproject: PRJNA493215) |
| Maihueniopsis conoidea | Opuntioideae | SRR7905848 (Bioproject: PRJNA493215) |
| Matucana aurantiaca | Cactoideae | SRR7905855 (Bioproject: PRJNA493215) |
| Opuntia arenaria | Opuntioideae | SRR7905850 (Bioproject: PRJNA493215) |
| O. cochenillifera | Opuntioideae | SRR1698108 |
| O. ficus indica | Opuntioideae | SRR3567682 |
| O. streptacantha | Opuntioideae | SRR3478181 |
| Pachycereus gatesii | Cactoideae | SRR7905847 (Bioproject: PRJNA493215) |
| Peniocereus cuixmalensis | Cactoideae | SRR7905861 (Bioproject: PRJNA493215) |
| Pereskia grandifolia | Leuenbergeria + Pereskia | SRR1698106 |
| Portulaca oleracea 1 | Outgroup | SRR10247085 |
| P. oleracea 2 | Outgroup | SRR10247116 |
| Pterocactus tuberosus | Opuntioideae | SRR7905860 (Bioproject: PRJNA493215) |
| Rhipsalis baccifera | Cactoideae | SRR7905851 (Bioproject: PRJNA493215) |
| Salmiopuntia salmiana | Opuntioideae | SRR7905862 (Bioproject: PRJNA493215) |
| Stenocereus yunckeri | Cactoideae | SRR7905856 (Bioproject: PRJNA493215) |
| Stetsonia coryne | Cactoideae | SRR7905865(Bioproject: PRJNA493215) |
| Tacinga lilae | Opuntioideae | SRR7905864 (Bioproject: PRJNA493215) |
| Talinopsis frutescens | Outgroup | SRR6435354 (Bioproject: PRJNA428216) |
| Tephrocactus bonnieae | Opuntioideae | SRR7905863 (Bioproject: PRJNA493215) |
| Tunilla corrugata | Opuntioideae | SRR7905866 (Bioproject: PRJNA493215) |