| 5′ UTRs | 5′ Untranslated regions |
| lncRNA | long non-coding RNA |
| UCSC | University of California Santa Cruz |
| bp | base pairs |
| TSS | transcription starting site |
| PSSM | position-specific scoring matrix |
| MFE | minimum free energy |
| GO | Gene Ontology |
| RPM | Million Mapped reads |
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