Table 1.
The genes and encoded protein properties of all CCDs identified in this study.
| Species | Gene Name | Gene ID | PI | Molecular Weight (kDa) | Chromosome Location | Gene Length (bp) | CDS Length (bp) | Number of Amino Acids (aa) | Grand Average of Hydropathicity | Subcellular Localization |
|---|---|---|---|---|---|---|---|---|---|---|
| Citrullus lanatus | ClCCD1 | Cla97C09G166380 | 6.21 | 61.47 | Chr09: 3477850 .. 3484797 (+) | 6948 | 1644 | 547 | −0.291 | Cytoplasm |
| ClCCD4 | Cla97C07G137780 | 6.00 | 65.07 | Chr07: 25368259 .. 25370034 (+) | 1776 | 1776 | 591 | −0.234 | Chloroplast | |
| ClCCD7 | Cla97C06G111770 | 7.04 | 68.63 | Chr06: 2532539 .. 2541011 (−) | 8473 | 1833 | 610 | −0.215 | Chloroplast | |
| ClCCD8 | Cla97C08G155420 | 7.91 | 61.00 | Chr08: 23384307 .. 23388101 (−) | 3795 | 1644 | 547 | −0.235 | Chloroplast | |
| ClCCDLa | Cla97C11G221170 | 6.30 | 60.37 | Chr11: 27257473 .. 27262531 (+) | 5059 | 1596 | 531 | −0.301 | Cytoplasm | |
| ClCCDLb | Cla97C11G221180 | 6.84 | 67.14 | Chr11: 27264241 .. 27270176 (+) | 5936 | 1764 | 587 | −0.404 | Chloroplast | |
| ClNCED3 | Cla97C07G137260 | 5.81 | 64.04 | Chr07: 24786951 .. 24788687 (+) | 1737 | 1737 | 578 | −0.243 | Chloroplast | |
| ClNCED5a | Cla97C01G024630 | 6.28 | 67.74 | Chr01: 35670071 .. 35671885 (+) | 1815 | 1815 | 604 | −0.404 | Chloroplast | |
| ClNCED5b | Cla97C03G058030 | 5.61 | 56.93 | Chr03: 7238075 .. 7239598 (−) | 1524 | 1524 | 507 | −0.28 | Cytoplasm | |
| ClNCED6 | Cla97C06G117340 | 7.3 | 62.69 | Chr06: 9148622 .. 9150322 (+) | 1701 | 1701 | 566 | −0.279 | Cytoplasm | |
| Cucumis melo | CmCCD1 | MELO3C023555.2 | 6.01 | 61.28 | Chr01: 33650150 .. 33657132 (+) | 6983 | 1644 | 547 | −0.278 | Cytoplasm |
| CmCCD4 | MELO3C016224.2 | 6.1 | 65.08 | Chr07: 22480061 .. 22482158 (−) | 2098 | 1779 | 592 | −0.235 | Chloroplast | |
| CmCCD7 | MELO3C022291.2 | 7.82 | 75.47 | Chr11: 32532564 .. 32539629 (+) | 7066 | 2010 | 669 | −0.422 | Chloroplast | |
| CmCCD8 | MELO3C011142.2 | 6.13 | 61.14 | Chr03: 28383115 .. 28386694 (+) | 3580 | 1653 | 550 | −0.232 | Chloroplast | |
| CmCCDL | MELO3C003462.2 | 7.12 | 76.52 | Chr04: 1417853 .. 1422210 (−) | 4358 | 2010 | 669 | −0.404 | Chloroplast | |
| CmNCED3 | MELO3C027057.2 | 6.06 | 69.64 | Chr00: 1582539 .. 1584421 (+) | 1883 | 1881 | 626 | −0.214 | Chloroplast | |
| CmNCED5a | MELO3C007127.2 | 8.34 | 67.09 | Chr08: 991369 .. 993401 (−) | 2033 | 1800 | 599 | −0.389 | Chloroplast | |
| CmNCED5b | MELO3C002744.2 | 6.32 | 65.23 | Chr12: 21375227 .. 21377259 (−) | 2033 | 1728 | 575 | −0.378 | Mitochondrion | |
| CmNCED6 | MELO3C023086.2 | 7.98 | 63.02 | Chr05: 7293775 .. 7295481 (−) | 1707 | 1707 | 568 | −0.278 | Mitochondrion | |
| Cucumis sativus | CsCCD1 | CsaV3_7G031010 | 5.93 | 61.34 | Chr07: 19638561 .. 19646579 (+) | 7679 | 1644 | 547 | −0.276 | Cytoplasm |
| CsCCD4 | CsaV3_4G007180 | 5.83 | 65.04 | Chr04: 4915379 .. 4917916 (−) | 2538 | 1776 | 591 | −0.236 | Chloroplast | |
| CsCCD7 | CsaV3_6G008730 | 6.73 | 69.42 | Chr06: 7029451 .. 7035039 (+) | 5589 | 1845 | 614 | −0.345 | Chloroplast | |
| CsCCD8 | CsaV3_2G030870 | 6.17 | 60.76 | Chr02: 20280011 .. 20284196 (−) | 4186 | 1644 | 547 | −0.235 | Chloroplast | |
| CsCCDL | CsaV3_3G048570 | 8.92 | 59.86 | Chr03: 39663250 .. 39666931 (+) | 3682 | 1578 | 525 | −0.364 | Chloroplast | |
| CsNCED3 | CsaV3_4G007760 | 6.04 | 65.82 | Chr04: 5381592 .. 5384221 (−) | 2630 | 1785 | 594 | −0.273 | Chloroplast | |
| CsNCED5a | CsaV3_1G032340 | 6.82 | 66.92 | Chr01: 19294926 .. 19297672 (−) | 2747 | 1782 | 593 | −0.335 | Chloroplast | |
| CsNCED5b | CsaV3_6G051790 | 8.34 | 67.15 | Chr06: 30131435 .. 30133535 (+) | 2101 | 1803 | 600 | −0.377 | Chloroplast | |
| CsNCED6 | CsaV3_2G012080 | 8.78 | 63.02 | Chr02: 9534360 .. 9536321 (+) | 1962 | 1707 | 568 | −0.298 | Chloroplast | |
| Cucurbita moschata | CmoCCD1 | CmoCh17G009320 | 6.82 | 69.02 | Chr17: 8291575 .. 8300490 (−) | 8916 | 1848 | 615 | −0.186 | Cytoplasm |
| CmoCCD4a | CmoCh04G006500 | 5.7 | 64.61 | Chr04: 3223403 .. 3225163 (−) | 1761 | 1761 | 586 | −0.222 | Chloroplast | |
| CmoCCD4b | CmoCh16G005460 | 6.05 | 65.30 | Chr16: 2645574 .. 2647358 (+) | 1785 | 1785 | 594 | −0.231 | Chloroplast | |
| CmoCCD7 | CmoCh17G005060 | 6.45 | 68.79 | Chr17: 4737408 .. 4741956 (−) | 4549 | 1848 | 615 | −0.258 | Chloroplast | |
| CmoCCD8a | CmoCh05G006180 | 8.73 | 60.84 | Chr05: 3082399 .. 3087453 (−) | 5055 | 1644 | 547 | −0.221 | Chloroplast | |
| CmoCCD8b | CmoCh12G002040 | 6.58 | 59.53 | Chr12: 1340192 .. 1343166 (−) | 2975 | 1608 | 535 | −0.23 | Chloroplast | |
| CmoCCDL | CmoCh01G014860 | 6.59 | 68.36 | Chr01: 11513752 .. 11518925 (−) | 5174 | 1821 | 606 | −0.293 | Chloroplast | |
| CmoNCED3a | CmoCh04G006910 | 6.49 | 64.70 | Chr04: 3434234 .. 3435985 (−) | 1752 | 1752 | 583 | −0.254 | Mitochondrion | |
| CmoNCED3b | CmoCh16G004950 | 5.61 | 63.95 | Chr16: 2388840 .. 2390824 (+) | 1985 | 1725 | 574 | −0.291 | Chloroplast | |
| CmoNCED5a | CmoCh03G013970 | 6.58 | 65.79 | Chr03: 10201389 .. 10203155 (+) | 1767 | 1767 | 588 | −0.389 | Chloroplast | |
| CmoNCED5b | CmoCh07G001020 | 5.86 | 57.28 | Chr07: 595470 .. 596999 (−) | 1530 | 1530 | 509 | −0.314 | Cytoplasm | |
| CmoNCED5C | CmoCh13G005570 | 6.06 | 65.71 | Chr13: 6389844 .. 6391610 (−) | 1767 | 1767 | 588 | −0.287 | Chloroplast | |
| CmoNCED6 | CmoCh17G001180 | 7.26 | 62.53 | Chr17: 638459 .. 640162 (−) | 1704 | 1704 | 567 | −0.226 | Chloroplast | |
| Lagenaria siceraria | LsiCCD1 | Lsi02G025710 | 6.33 | 58.89 | Chr02: 32164396 .. 32169161 (+) | 4766 | 1536 | 511 | 0.037 | Plasma membrane |
| LsiCCD4 | Lsi07G007810 | 5.91 | 65.09 | Chr07: 8595598 .. 8597373 (−) | 1776 | 1776 | 591 | −0.207 | Chloroplast | |
| LsiCCD7 | Lsi09G016990 | 6.3 | 59.89 | Chr09: 25505283 .. 25512032 (+) | 6750 | 1596 | 531 | −0.212 | Cytoplasm | |
| LsiCCD8 | Lsi08G010850 | 8.34 | 46.52 | Chr08: 19415522 .. 19419519 (−) | 3998 | 1245 | 414 | −0.161 | Chloroplast | |
| LsiNCED3 | Lsi07G008450 | 5.94 | 65.41 | Chr07: 9468950 .. 9470722 (−) | 1773 | 1773 | 590 | −0.265 | Chloroplast | |
| LsiNCED5a | Lsi01G001400 | 6.65 | 66.92 | Chr01: 1451654 .. 1453447 (−) | 1794 | 1794 | 597 | −0.385 | Chloroplast | |
| LsiNCED5b | Lsi02G008960 | 6.22 | 65.05 | Chr02: 8564357 .. 8566090 (+) | 1734 | 1734 | 577 | −0.325 | Chloroplast | |
| LsiNCED6 | Lsi09G011600 | 8.16 | 62.28 | Chr09: 18638525 .. 18640216 (−) | 1692 | 1692 | 563 | −0.243 | Cytoplasm | |
| Benincasa hispida | BhCCD1 | Bhi09G000536 | 6.16 | 61.37 | Chr09: 13766074 .. 13779057 (−) | 12984 | 1644 | 547 | −0.266 | Cytoplasm |
| BhCCD4 | Bhi01G002364 | 6.05 | 64.50 | Chr01: 75445296 .. 75451135 (−) | 5840 | 1764 | 587 | −0.228 | Chloroplast | |
| BhCCD7 | Bhi12G001994 | 8.54 | 68.73 | Chr12: 71046834 .. 71054528 (+) | 7695 | 1830 | 609 | −0.192 | Chloroplast | |
| BhCCD8 | Bhi04G000698 | 8.17 | 60.39 | Chr04: 21509866 .. 21515484 (+) | 5619 | 1632 | 543 | −0.266 | Chloroplast | |
| BhCCDL | Bhi09G002182 | 6.26 | 67.97 | Chr09: 70181013 .. 70188430 (+) | 7418 | 1785 | 594 | −0.35 | Chloroplast | |
| BhNCED3 | Bhi01G002426 | 6.38 | 70.01 | Chr01: 77692588 .. 77694885 (−) | 2298 | 1902 | 633 | −0.214 | Chloroplast | |
| BhNCED5 | Bhi03G000083 | 8.53 | 67.40 | Chr03: 2257210 .. 2259286 (+) | 2077 | 1803 | 600 | −0.387 | Chloroplast | |
| BhNCED6 | Bhi12G001328 | 7.24 | 62.85 | Chr12: 49163168 .. 49165223 (+) | 2056 | 1707 | 568 | −0.271 | Chloroplast |