TABLE 2.
Description | Gene markers | THCA | PRAD | PAAD | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
None | Purity | None | Purity | None | Purity | ||||||||
Cor | P | Cor | P | Cor | P | Cor | P | Cor | P | Cor | P | ||
Th1 | TBX21 | −0.199 | a | −0.192 | a | −0.2 | a | −0.17 | a | −0.194 | b | −0.143 | 0.062 |
STAT4 | −0.317 | a | −0.317 | a | −0.281 | a | −0.216 | a | −0.207 | b | −0.179 | c | |
STAT1 | −0.451 | a | −0.436 | a | −0.421 | a | −0.339 | a | −0.355 | a | −0.302 | a | |
IFNG | −0.231 | a | −0.221 | a | −0.206 | a | −0.144 | b | −0.277 | a | −0.238 | b | |
TNF | −0.236 | a | −0.229 | a | −0.261 | a | −0.168 | a | −0.125 | 0.096 | −0.076 | 0.32 | |
IL12A | −0.064 | 0.152 | −0.057 | 0.206 | −0.21 | a | −0.155 | b | −0.127 | 0.09 | −0.108 | 0.159 | |
IL12B | −0.254 | a | −0.245 | a | −0.211 | a | −0.145 | b | −0.134 | 0.075 | −0.101 | 0.187 | |
Th1-like | HAVCR2 | −0.395 | a | −0.382 | a | −0.364 | a | −0.3 | a | −0.352 | a | −0.28 | a |
IFNG | −0.231 | a | −0.221 | a | −0.206 | a | −0.144 | b | −0.277 | a | −0.238 | b | |
CXCR3 | −0.15 | a | −0.136 | a | −0.226 | a | −0.185 | a | −0.017 | 0.825 | 0.046 | 0.549 | |
BHLHE40 | −0.375 | a | −0.367 | a | −0.345 | a | −0.311 | a | −0.097 | 0.196 | −0.091 | 0.238 | |
CD4 | −0.394 | a | −0.384 | a | −0.4 | a | −0.322 | a | −0.337 | a | −0.268 | a | |
Th2 | GATA3 | −0.077 | 0.082 | −0.058 | 0.199 | −0.127 | b | −0.035 | 0.479 | −0.157 | c | −0.119 | 0.122 |
STAT6 | −0.301 | a | −0.285 | a | −0.308 | a | −0.269 | a | −0.034 | 0.65 | −0.019 | 0.806 | |
STAT5A | −0.273 | a | −0.266 | a | −0.24 | a | −0.164 | a | −0.072 | 0.339 | −0.006 | 0.942 | |
IL13 | −0.074 | 0.094 | −0.071 | 0.116 | −0.061 | 0.177 | −0.088 | 0.073 | −0.058 | 0.441 | −0.049 | 0.521 | |
Th17 | STAT3 | −0.356 | a | −0.336 | a | −0.449 | a | −0.385 | a | −0.338 | a | −0.298 | a |
IL17A | −0.135 | a | −0.13 | b | −0.139 | b | −0.028 | 0.565 | −0.235 | b | −0.228 | b | |
Tfh | BCL6 | −0.231 | a | −0.202 | a | −0.316 | a | −0.306 | a | −0.26 | a | −0.238 | b |
IL21 | −0.144 | b | −0.133 | b | −0.139 | b | −0.116 | c | −0.089 | 0.234 | −0.048 | 0.532 | |
Treg | FOXP3 | −0.377 | a | −0.363 | a | −0.332 | a | −0.337 | a | −0.264 | a | −0.199 | b |
CCR8 | −0.421 | a | −0.402 | a | −0.451 | a | −0.396 | a | −0.392 | a | −0.342 | a | |
STAT5B | −0.209 | a | −0.189 | a | −0.465 | a | −0.409 | a | −0.126 | 0.093 | −0.127 | 0.098 | |
TGFB1 | −0.05 | 0.264 | −0.042 | 0.359 | −0.179 | a | −0.193 | a | 0.07 | 0.353 | 0.133 | 0.083 | |
Resting Treg | FOXP3 | −0.377 | a | −0.363 | a | −0.332 | a | −0.337 | a | −0.264 | a | −0.199 | b |
IL2RA | −0.414 | a | −0.404 | a | −0.414 | a | −0.356 | a | −0.397 | a | −0.334 | a | |
Effector Treg | FOXP3 | −0.377 | a | −0.363 | a | −0.332 | a | −0.337 | a | −0.264 | a | −0.199 | b |
T-cell | CCR8 | −0.421 | a | −0.402 | a | −0.451 | a | −0.396 | a | −0.392 | a | −0.342 | a |
TNFRSF9 | −0.38 | a | −0.361 | a | −0.454 | a | −0.377 | a | −0.362 | a | −0.309 | a | |
Effector | CX3CR1 | −0.17 | a | −0.162 | a | −0.383 | a | −0.262 | a | −0.262 | a | −0.236 | b |
T-cell | FGFBP2 | 0.055 | 0.217 | 0.051 | 0.259 | −0.118 | b | −0.094 | 0.056 | −0.22 | b | −0.196 | c |
FCGR3A | −0.336 | a | −0.329 | a | −0.38 | a | −0.317 | a | −0.388 | a | −0.326 | a | |
Naive T-cell | CCR7 | −0.293 | a | −0.276 | a | −0.274 | a | −0.217 | a | −0.178 | c | −0.124 | 0.106 |
SELL | −0.355 | a | −0.352 | a | −0.4 | a | −0.331 | a | −0.249 | a | −0.183 | c | |
Effector memory | DUSP4 | −0.29 | a | −0.278 | a | −0.162 | a | −0.153 | a | −0.111 | 0.137 | 0.09 | 0.242 |
T-cell | GZMK | −0.253 | a | −0.242 | a | −0.258 | a | −0.19 | a | −0.216 | b | −0.149 | 0.052 |
GZMA | −0.242 | a | −0.235 | a | −0.228 | a | −0.151 | b | −0.222 | b | −0.173 | c | |
Resident memory | CD69 | −0.324 | a | −0.311 | a | −0.389 | a | −0.306 | a | −0.335 | a | −0.297 | a |
T-cell | CXCR6 | −0.282 | a | −0.269 | a | −0.292 | a | −0.188 | a | −0.339 | a | −0.283 | a |
MYADM | −0.144 | a | −0.123 | b | −0.335 | a | −0.306 | a | −0.186 | c | −0.159 | c | |
General memory | CCR7 | −0.293 | a | −0.276 | a | −0.274 | a | −0.217 | a | −0.178 | c | −0.124 | 0.106 |
T-cell | SELL | −0.355 | a | −0.352 | a | −0.4 | a | −0.331 | a | −0.249 | a | −0.183 | c |
IL7R | −0.415 | a | −0.4 | a | −0.458 | a | −0.394 | a | −0.425 | a | −0.38 | a | |
Exhausted T cell | PDCD1 | −0.152 | a | −0.154 | a | −0.088 | c | −0.072 | 0.142 | −0.117 | 0.119 | −0.044 | 0.568 |
CTLA4 | −0.317 | a | −0.304 | a | −0.151 | a | −0.115 | c | −0.227 | b | −0.159 | c | |
LAG3 | −0.211 | a | −0.207 | a | −0.031 | 0.486 | 0.001 | 0.98 | −0.074 | 0.323 | −0.047 | 0.543 | |
HAVCR2 | −0.395 | a | −0.382 | a | −0.364 | a | −0.3 | a | −0.352 | a | −0.28 | a | |
GZMB | −0.231 | a | −0.23 | a | −0.162 | a | −0.114 | c | −0.33 | a | −0.273 | a | |
CXCL13 | −0.264 | a | −0.262 | a | −0.192 | a | −0.147 | b | −0.218 | b | −0.161 | c | |
LAYN | −0.073 | 0.098 | −0.074 | 0.101 | −0.237 | a | −0.189 | a | −0.217 | b | −0.162 | c |
p < 0.05.
p < 0.01.
p < 0.001.