Table 2.
Classification of the repeat sequences in the genome of Stropharia rugosoannulata.
| Classification | Order | Superfamily | Number of Elements | Length of Sequence (bp) | Percentage of Sequence (%) |
|---|---|---|---|---|---|
| Class I (retrotransposons) | 7915 | 6,192,475 | 12.81 | ||
| LTR | 5813 | 5,386,682 | 11.15 | ||
| Gypsy | 2292 | 3,629,891 | 7.51 | ||
| Copia | 987 | 521,946 | 1.08 | ||
| Unknown | 2534 | 1,186,845 | 2.55 | ||
| LINE | 1986 | 790,514 | 1.64 | ||
| SINE | 116 | 15,279 | 0.03 | ||
| Class II (DNA transposons) | 3706 | 2,254,847 | 4.67 | ||
| DNA | 2473 | 1,745,535 | 3.61 | ||
| MITE | 1090 | 417,182 | 0.86 | ||
| RC | Helitron | 143 | 92,130 | 0.19 | |
| Total TEs | 11,621 | 8,447,322 | 17.48 | ||
| Tandem Repeats | 4087 | 227,073 | 0.47 | ||
| Ttandem repeat | 2288 | 204,520 | 0.42 | ||
| SSR | 1799 | 22,553 | 0.05 | ||
| Simple repeats | 203 | 19,120 | 0.04 | ||
| Unknown | 2463 | 927,192 | 1.92 | ||
| Low complexity | 9 | 1419 | 0.00 | ||
| Total repeats | 18,383 | 9,622,126 | 19.91 | ||