Table 2.
Results of genome sequencing and assembly of MiSeq short-read (SRS) and Oxford Nanopore (ONT) data separately or in combination by polishing ONT results with Illumina reads (ONT/SRS).
| Strain | Method | Coverage | Bases | Contigs | Indels per 100 kbp | N50 | L50 | RGF% * |
|---|---|---|---|---|---|---|---|---|
| BA-C10-CHER | SRS | 158 | 5,461,659 | 72 | 4.14 | 204,605 | 7 | 99.095 |
| ONT | 293 | 5,506,898 | 3 | 9.28 | 5,230,398 | 1 | 99.995 | |
| ONT/SRS | - | 5,506,660 | 3 | 4.42 | 5,230,171 | 1 | 99.995 | |
| BA-D12-MEL | SRS | 123 | 5,464,102 | 77 | 4.04 | 172,867 | 10 | 99.059 |
| ONT | 356 | 5,506,420 | 3 | 9.07 | 5,229,931 | 1 | 99.995 | |
| ONT/SRS | - | 5,506,276 | 3 | 4.32 | 5,229,793 | 1 | 99.995 | |
| BA-C12-SU | SRS | 85 | 5,450,437 | 144 | 4.21 | 117,282 | 14 | 98.762 |
| ONT | 377 | 5,506,896 | 3 | 9.18 | 5,230,396 | 1 | 99.995 | |
| ONT/SRS | - | 5,506,662 | 3 | 4.51 | 5,230,173 | 1 | 99.995 | |
| BA-S12-SU | SRS | 160 | 5,613,511 | 958 | 3.98 | 289,064 | 7 | 99.052 |
| ONT | 369 | 5,506,632 | 3 | 8.67 | 5,230,160 | 1 | 99.992 | |
| ONT/SRS | - | 5,506,423 | 3 | 4.45 | 5,229,957 | 1 | 99.992 |
* Reference Genome Fraction in %.