Table 2.
General statistics and viral diversity indices for the datasets used in the study.
| Samples | Reads_total | Viral Reads in Viral Scaffolds | Viral Scaffolds | Viral Scaffolds with Taxonomic Assignment | Virotypes | Chao1 (Scaffolds/Virotypes) | ACE (Scaffolds/Virotypes) | Shannon (Scaffolds/Virotypes) | Simpson (Scaffolds/Virotypes) | Reference 1 |
|---|---|---|---|---|---|---|---|---|---|---|
| Sv2475.1d | 4,348,746 | 637,148 (14.7%) | 404 | 318 (78.7%) | 168 | 408/173 | 407/173 | 4.5/3.2 | 0.97/0.91 | This study |
| Sv2478.2h | 3,574,388 | 681,061 (19.1%) | 417 | 325 (77.9%) | 171 | 417/172 | 418/173 | 4.8/3.2 | 0.98/0.87 | This study |
| LBw.4g | 9,477,618 | 805,244 (8.5%) | 428 | 338 (79.0%) | 183 | 429/186 | 433/187 | 5.1/4.1 | 0.99/0.97 | This study |
| I.basta.d | 15,774,944 | 788,317 (5.0%) | 208 | 161 (77.4%) | 98 | 211/99 | 213/99 | 4.3/3.2 | 0.98/0.93 | - |
| I.basta.h | 17,123,842 | 1,307,528 (7.6%) | 225 | 175 (77.8%) | 109 | 228/110 | 231/111 | 4.1/3.1 | 0.97/0.92 | [22] 2 |
| I.basta.md | 15,050,992 | 711,400 (4.7%) | 190 | 147 (77.4%) | 89 | 190/89 | 192/91 | 4.3/3.2 | 0.98/0.93 | - |
| I.basta.nd | 15,377,078 | 770,232 (5.0%) | 197 | 156 (79.2%) | 99 | 197/100 | 198/101 | 4.3/3.3 | 0.98/0.94 | [22] |
| GBR.sw | 9,359,144 | 1,107,475 (11.8%) | 384 | 297 (77.3%) | 178 | 405/182 | 407/185 | 4.7/3.9 | 0.98/0.96 | - |
1 Unpublished datasets are marked with “-”. 2 Partially published dataset (see Table 1 for details).