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. 2022 Feb 17;29(2):191–201.e8. doi: 10.1016/j.chembiol.2021.07.010
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

mouse anti-HA Sigma Cat#H3663; RRID: AB_262051
rabbit anti-GAPDH Abcam Cat#AB9485; RRID: AB_307275
anti-mouse horseradish peroxidase (HRP)-conjugated Thermo Fisher Scientific Cat#62-6520; RRID: AB_2533947
anti-rabbit horseradish peroxidase (HRP)-conjugated Cell Signaling Technology Cat#7074S; RRID: AB_2099233
Rabbit anti tetra-acetylated H4 Sigma-Aldrich Cat#06-866; RRID: AB_310270
Rabbit anti-H4K8ac Cell Signaling Technology Cat#2594; RRID: AB_2248400
Rabbit anti-H3K9ac Cell Signaling Technology Cat#9649; RRID: AB_2248400
Rabbit anti- H3 Cell Signaling Technology Cat#4499; RRID: AB_10544537
Rabbit anti-PfBiP (Shonhai et al., 2007) N/A
800CW goat anti-rabbit IgG Licor Cat#926-32211; RRID: AB_621843
anti-mouse Alexa Fluor® 488-conjugated secondary antibody Cell signaling Technology Cat#4408S; RRID: AB_10694704
Mouse anti-His antibody Pierce Cat#MA1-21315; RRID: AB_557403

Bacterial strains

E. coli DH10Bac Invitrogen Cat#10361012
E. coli XL1 cells Agilent Technologies Cat#50125058

Chemicals, peptides, and recombinant proteins

SYBR Green I fluorescent dye Invitrogen Cat#S7563
MitoTracker Deep Red FM Life Technologies Cat#M22426
MMV084978 Medicines for Malaria Venture (Antonova-Koch et al., 2018) N/A
MMV019721 Medicines for Malaria Venture (Duffy et al., 2017) N/A
WR99210 Jacobus Pharmaceuticals CAS 47326-86-3
Anhydrotetracycline hydrochloride Sigma-Aldrich Cat#37919; CAS 13803-65-1
Blasticidin S hydrochloride RPI Corp Cat#B12150-0.1; CAS 3513-03-9
Trichostatin A Sigma-Aldrich Cat#T8552; CAS 58880-19-6
Atovaquone AK scientific Cat#G211; CAS 95233-18-4
Chloroquine diphosphate salt Sigma-Aldrich Cat# C6628; CAS 50-63-5

Critical commercial assays

Nextera XT kit Illumina Cat# FC-131-1024
DNeasy Blood and Tissue Kit Quiagen Cat#69506
SuperSignal® West Pico Chemiluminescent substrate Thermo Fisher Scientific Cat#PI34080
Expi293™ Expression System Kit Thermo Fisher Scientific Cat#A14635
Renilla-Glo(R) Luciferase Assay System Promega Cat#E2750
Maxiprep system Qiagen Cat#12163
EnzChek™ Phosphate Assay Kit Thermo Fisher Scientific Cat#E6646

Deposited data

Whole Genome Sequencing data NCBI Sequence Read Archive (SRA) SRA BioProject Accession number: PRJNA684602
Metabolomics Data National Metabolomics Data Repository (NMDR) NMDR Project ID: PR001065
Crystal structure of acetyl-CoA synthetase from C. neoformans H99 used for PfAcAS modelling RCSB Protein Data Bank PDBID: 5U29
Crystal structure of the adenylation domain of carboxylic acid reductase of Nocardia iowensis in the adenylation conformation used for PfACS11 modelling (Gahloth et al., 2017) PDBID: 5MSD

Experimental models: cell lines

H. sapiens Expi293 mammalian cells Thermofisher Cat# A14527
S. frugiperda Sf9 insect cells Novagen Cat#71104-M
NF54-PfACS11-cKD This paper N/A
Dd2-B2 (Cowell et al., 2018) N/A
NF54-expressing Cas9- and T7 RNA polymerase (Nasamu et al., 2020) N/A
NF54-PfAcAS-cKD This paper N/A
Dd2-B2-A597V_crispr This paper N/A
Dd2-B2-T648M_crispr This paper N/A
See Table S2 for additional selected cell lines

Oligonucleotides

Oligos for sequencing of PfAcAS (See Table S7) Integrated DNA Technologies N/A
Oligos for CRISPR gene editing and plasmid construction (See Table S7) ThermoFisher N/A

Recombinant DNA

pDC2-coCas9-U6.2-hDHFR plasmid (Lim et al., 2016) N/A
pDC2-coCas9-gRNA-hDHFR plasmid (Lim et al., 2016) N/A
pDC2-coCas9-AcAS-A597V-gRNA1-hDHFR This paper N/A
pDC2-coCas9-AcAS-T648M-gRNA1-hDHFR This paper N/A
pDC2-coCas9-gRNA2-hDHFR This paper N/A
pSN054 (Nasamu et al., 2020) N/A
AcAS_pSN054 This paper N/A
pET15b Novagen Cat#118754
pET15b-PPT343 This paper N/A
pFastBac™-HT Invitrogen Cat#10584027
pFastBac-PPT358 This paper N/A
pFastBac-PPT409 This paper N/A
pFastBac-PPT410 This paper N/A

Software and algorithms

GATK HaplotypeCaller (McKenna et al., 2010), https://gatk.broadinstitute.org/hc/en-us
El-Maven LC/MS data processing software El-Maven https://resources.elucidata.io/elmaven
MetaboAnalystR 2.0 (Chong and Xia, 2018; Chong et al., 2019) https://www.rdocumentation.org/packages/MetaboAnalystR/versions/2.0.0
I-TASSER pipeline (Yang and Zhang, 2015; Zhang et al., 2017) https://zhanglab.ccmb.med.umich.edu/I-TASSER/
PyMOL 2.2.3 Schrödinger, Inc. https://pymol.org/2/
Benchling Benchling https://benchling.com/
Image Lab 5.2.0 Bio-Rad https://www.bio-rad.com/en-us/product/image-lab-software?ID=KRE6P5E8Z
Image Studio ver 5.2 Li-Cor https://www.licor.com/bio/image-studio/
ImageJ NIH https://imagej.nih.gov/ij/
Graphpad Prism 8.0 Graphpad Software Inc. https://www.graphpad.com/scientific-software/prism/