Antibodies |
|
mouse anti-HA |
Sigma |
Cat#H3663; RRID: AB_262051
|
rabbit anti-GAPDH |
Abcam |
Cat#AB9485; RRID: AB_307275
|
anti-mouse horseradish peroxidase (HRP)-conjugated |
Thermo Fisher Scientific |
Cat#62-6520; RRID: AB_2533947
|
anti-rabbit horseradish peroxidase (HRP)-conjugated |
Cell Signaling Technology |
Cat#7074S; RRID: AB_2099233
|
Rabbit anti tetra-acetylated H4 |
Sigma-Aldrich |
Cat#06-866; RRID: AB_310270
|
Rabbit anti-H4K8ac |
Cell Signaling Technology |
Cat#2594; RRID: AB_2248400
|
Rabbit anti-H3K9ac |
Cell Signaling Technology |
Cat#9649; RRID: AB_2248400
|
Rabbit anti- H3 |
Cell Signaling Technology |
Cat#4499; RRID: AB_10544537
|
Rabbit anti-PfBiP |
(Shonhai et al., 2007) |
N/A |
800CW goat anti-rabbit IgG |
Licor |
Cat#926-32211; RRID: AB_621843
|
anti-mouse Alexa Fluor® 488-conjugated secondary antibody |
Cell signaling Technology |
Cat#4408S; RRID: AB_10694704
|
Mouse anti-His antibody |
Pierce |
Cat#MA1-21315; RRID: AB_557403
|
|
Bacterial strains |
|
E. coli DH10Bac |
Invitrogen |
Cat#10361012 |
E. coli XL1 cells |
Agilent Technologies |
Cat#50125058 |
|
Chemicals, peptides, and recombinant proteins |
|
SYBR Green I fluorescent dye |
Invitrogen |
Cat#S7563 |
MitoTracker Deep Red FM |
Life Technologies |
Cat#M22426
|
MMV084978 |
Medicines for Malaria Venture (Antonova-Koch et al., 2018) |
N/A |
MMV019721 |
Medicines for Malaria Venture (Duffy et al., 2017) |
N/A |
WR99210 |
Jacobus Pharmaceuticals |
CAS 47326-86-3 |
Anhydrotetracycline hydrochloride |
Sigma-Aldrich |
Cat#37919; CAS 13803-65-1 |
Blasticidin S hydrochloride |
RPI Corp |
Cat#B12150-0.1; CAS 3513-03-9 |
Trichostatin A |
Sigma-Aldrich |
Cat#T8552; CAS 58880-19-6 |
Atovaquone |
AK scientific |
Cat#G211; CAS 95233-18-4 |
Chloroquine diphosphate salt |
Sigma-Aldrich |
Cat# C6628; CAS 50-63-5 |
|
Critical commercial assays |
|
Nextera XT kit |
Illumina |
Cat# FC-131-1024 |
DNeasy Blood and Tissue Kit |
Quiagen |
Cat#69506 |
SuperSignal® West Pico Chemiluminescent substrate |
Thermo Fisher Scientific |
Cat#PI34080 |
Expi293™ Expression System Kit |
Thermo Fisher Scientific |
Cat#A14635 |
Renilla-Glo(R) Luciferase Assay System |
Promega |
Cat#E2750 |
Maxiprep system |
Qiagen |
Cat#12163 |
EnzChek™ Phosphate Assay Kit |
Thermo Fisher Scientific |
Cat#E6646 |
|
Deposited data |
|
Whole Genome Sequencing data |
NCBI Sequence Read Archive (SRA) |
SRA BioProject Accession number: PRJNA684602
|
Metabolomics Data |
National Metabolomics Data Repository (NMDR) |
NMDR Project ID: PR001065
|
Crystal structure of acetyl-CoA synthetase from C. neoformans H99 used for PfAcAS modelling |
RCSB Protein Data Bank |
PDBID: 5U29
|
Crystal structure of the adenylation domain of carboxylic acid reductase of Nocardia iowensis in the adenylation conformation used for PfACS11 modelling |
(Gahloth et al., 2017) |
PDBID: 5MSD
|
|
Experimental models: cell lines |
|
H. sapiens Expi293 mammalian cells |
Thermofisher |
Cat# A14527 |
S. frugiperda Sf9 insect cells |
Novagen |
Cat#71104-M |
NF54-PfACS11-cKD |
This paper |
N/A |
Dd2-B2 |
(Cowell et al., 2018) |
N/A |
NF54-expressing Cas9- and T7 RNA polymerase |
(Nasamu et al., 2020) |
N/A |
NF54-PfAcAS-cKD |
This paper |
N/A |
Dd2-B2-A597V_crispr |
This paper |
N/A |
Dd2-B2-T648M_crispr |
This paper |
N/A |
See Table S2 for additional selected cell lines |
|
|
|
Oligonucleotides |
|
Oligos for sequencing of PfAcAS (See Table S7) |
Integrated DNA Technologies |
N/A |
Oligos for CRISPR gene editing and plasmid construction (See Table S7) |
ThermoFisher |
N/A |
|
Recombinant DNA |
|
pDC2-coCas9-U6.2-hDHFR plasmid |
(Lim et al., 2016) |
N/A |
pDC2-coCas9-gRNA-hDHFR plasmid |
(Lim et al., 2016) |
N/A |
pDC2-coCas9-AcAS-A597V-gRNA1-hDHFR |
This paper |
N/A |
pDC2-coCas9-AcAS-T648M-gRNA1-hDHFR |
This paper |
N/A |
pDC2-coCas9-gRNA2-hDHFR |
This paper |
N/A |
pSN054 |
(Nasamu et al., 2020) |
N/A |
AcAS_pSN054 |
This paper |
N/A |
pET15b |
Novagen |
Cat#118754 |
pET15b-PPT343 |
This paper |
N/A |
pFastBac™-HT |
Invitrogen |
Cat#10584027 |
pFastBac-PPT358 |
This paper |
N/A |
pFastBac-PPT409 |
This paper |
N/A |
pFastBac-PPT410 |
This paper |
N/A |
|
Software and algorithms |
|
GATK HaplotypeCaller |
(McKenna et al., 2010), |
https://gatk.broadinstitute.org/hc/en-us |
El-Maven LC/MS data processing software |
El-Maven |
https://resources.elucidata.io/elmaven |
MetaboAnalystR 2.0 |
(Chong and Xia, 2018; Chong et al., 2019) |
https://www.rdocumentation.org/packages/MetaboAnalystR/versions/2.0.0 |
I-TASSER pipeline |
(Yang and Zhang, 2015; Zhang et al., 2017) |
https://zhanglab.ccmb.med.umich.edu/I-TASSER/ |
PyMOL 2.2.3 |
Schrödinger, Inc. |
https://pymol.org/2/ |
Benchling |
Benchling |
https://benchling.com/ |
Image Lab 5.2.0 |
Bio-Rad |
https://www.bio-rad.com/en-us/product/image-lab-software?ID=KRE6P5E8Z |
Image Studio ver 5.2 |
Li-Cor |
https://www.licor.com/bio/image-studio/ |
ImageJ |
NIH |
https://imagej.nih.gov/ij/ |
Graphpad Prism 8.0 |
Graphpad Software Inc. |
https://www.graphpad.com/scientific-software/prism/ |