Table 2.
The entities of PREGO after the NER and mapping of every source: Counts of distinct entities of Taxa, Environments (ENVO terms), Biological Processes (Gene Ontology Biological process), and Molecular Function (Gene Ontology Molecular Function).
| Channel | Source | Taxonomy | Environments | Biological Processes | Molecular Function | |
|---|---|---|---|---|---|---|
| Literature | MEDLINE PubMed—PMC OA | Strains | 8929 | 1077 | 15,079 | 7318 |
| Species | 240,377 | |||||
| Total | 342,506 | |||||
| Environmental samples | MG-RAST amplicon | Strains | 1392 | 162 | - | - |
| Species | 4324 | |||||
| Total | 5859 | |||||
| MG-RAST metagenome | Strains | 2522 | 258 | - | 3839 | |
| Species | 4406 | |||||
| Total | 7157 | |||||
| MGnify amplicon | Strains | 2 | 216 | 11 | - | |
| Species | 1471 | |||||
| Total | 2955 | |||||
| Annotated Genomes and Isolates | JGI IMGisolates | Strains | 2398 | 241 | - | 3670 |
| Species | 11,203 | |||||
| Total | 13,849 | |||||
| STRUO | Strains | 6 | - | - | 2789 | |
| Species | 19,289 | |||||
| Total | 19,325 | |||||
| BioProject | Strains | 5754 | 309 | 626 | - | |
| Species | 3373 | |||||
| Total | 9393 | |||||
| Total | All | Strains | 12,840 | 1090 | 15,091 | 7971 |
| Species | 258,352 | |||||
| Total | 364,508 | |||||