Table 6.
Binding sites remaining at best threshold
| Consensus/Patser | Dyad-analysis/dyad sweeping | |||
| Regulon | Sites/sites | 450/sites | Sites/sites | 450/sites |
| AraC | 60.00 | 20.00 | 80.00 | 100.00 |
| ArcA | 80.00 | 90.00 | 90.00 | 90.00 |
| ArgR | 83.33 | 100.00 | 100.00 | 66.67 |
| CRP | 80.95 | 63.49 | 90.48 | 95.24 |
| CysB | 100.00 | 80.00 | - | - |
| CytR | 100.00 | 16.67 | - | - |
| FIS | 40.00 | - | - | - |
| FNR | 65.00 | 70.00 | 50.00 | 65.00 |
| FruR | 100.00 | 85.71 | - | - |
| Fur | - | - | 75.00 | - |
| GlpR | - | - | 100.00 | 100.00 |
| IHF | 83.33 | 33.33 | - | - |
| LexA | 87.50 | 87.50 | 87.50 | 100.00 |
| Lrp | 40.00 | 60.00 | - | - |
| MalT | - | - | 75.00 | 100.00 |
| NR_I | - | - | 100.00 | 100.00 |
| NagC | - | - | - | 50.00 |
| NarL | 77.78 | 22.22 | - | - |
| PhoB | - | - | 75.00 | 75.00 |
| PurR | 69.23 | 84.62 | 92.31 | 84.62 |
| TrpR | 100.00 | 100.00 | 100.00 | - |
| TyrR | 62.5 | 87.50 | 75.00 | 37.50 |
| Average | 76.85 | 66.74 | 62.65 | 76.00 |
For each family, we show the results with Dyad-analysis/sweeping and with Consensus/Patser accepting a match only if its score exceeds the defined best threshold. This threshold corresponds to the highest overall performance, see Figures 3 and 4. Otherwise the results are treated as explained in Table 4. The column names are as described in Tables 3 and 4.