Table 1.
Plastome content of Coffeeae alliance tribes
| Gene group | Gene |
|---|---|
| Subunit of acetyl-CoA | accD |
| Large subunit of ribosomal proteins | rpl2+,*, rpl14, rpl16+,#, rpl20, rpl23*, rpl32, rpl33, rpl36 |
| Small subunit of ribosomal proteins | rps2, rps3, rps4, rps7*, rps8, rps11, rps12++,*, rps14, rps15, rps16, rps18, rps19Ψ,# |
| Ribosomal RNA genes | rrn4.5*, rrn5, rrn16*, rrn23* |
| Transfer RNA genes | trnA-UGC*, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnfM-CAU, trnG-GCC, trnG-UCC, trnH-GUG, trnI-CAU*, trnI-GAU*, trnK-UUU, trnL-CAA*, trnL-UAA, trnL-UAG, trnM-CAU, trnN-GUU*, trnP-UGG, trnQ-UUG, trnR-ACG*, trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC*, trnV-UAC, trnW-CCA, trnY-GUA |
| DNA-dependent RNA polymerase | rpoA, rpoB, rpoC1+, rpoC2 |
| Photosystem I | psaA, psaB, psaC, psaI, psaJ |
| Photosystem II | petA, petB+, petD+, petG, petL, petN |
| Cytochrome b/f complex | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ |
| ATP synthase | atpA, atpB, atpE, atpF, atpH, atpI |
| Maturase K | matK |
| Envelope membrane proteins | cemA |
| subunit of acetyl-CoA | accD |
| RubisCo large subunit | rbcL |
| Hypothetical reading frames | ycf1Ψ,#, ycf2*, ycf3++, ycf4 |
| Protease | clpP++ |
| NADH dehydrogenase | ndhA+, ndhB+,*, ndhC, ndhD, ndhE, ndhF++, ndhG, ndhH, ndhI, ndhJ, ndhK |
| c-type cytochrome | ccsA |
Note: +, single intron; ++, double introns; *, gene in the IR; Ψpseudogenes; #, duplicated