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. 2022 Feb 14;13:826594. doi: 10.3389/fgene.2022.826594

TABLE 1.

The most common mutations of epigenetic factors and their effect on the tumor microenvironment.

Epigenetic modifiers Function Mutation frequency Affected genes linked to immune signaling Changes in TME
KMT2D H3K4 methyltransferase 30% DLBCL CD40, IL-10-IL6 Increase of exhausted CD8+ T cells Brisou el al. (2018) and of effector immune cells Wang et al. (2020)
80% FL Decrease in Treg cells Wang et al. (2020)
KMT2C H3K4 methyltransferase 5% DLBCL IL1, GPX8, GSTA4, GSSTT1, ETS/PU.1, IRF, RUNX, AP-1 Increase of CD8+ T cells and of effector immune cells Liu et al. (2021); Zhang et al. (2021)
13% FL Decrease in Treg cells Liu et al. (2021); Zhang et al. (2021)
CREBBP Lysine acetyltransferase 15% DLBCL MHC II, CIITA, CD74, CD40, PDL1, IFN Decrease CD4+ T cells Green el al. (2015)
60% FL
EP300 Lysine acetyltransferase 5% DLBCL E2F1, CDC25B, CDKN1A, PDNA, CDT1, DNA2, RADE51, XRCC1 Increase of M2 macrophages Huang el al. (2021)
15% FL Decrease in Treg cells Liu et al. (2013)
EZH2 H3K27 methyltransferase 25% DLBCL CIITA, NLRC5, Th1-type chemokines Increase in FDCs Béguelin et al. (2020)
10–25% FL Decrease in TFH cells Béguelin et al. (2020)
TET2 Methylcytosine dioxygenase 2 10% DLBCL CD40, IL-10-IL6, MHC II Increase of CD8+ T cells memory Tsagaratou et al. (2017) and NK cells Carty et al. (2018)
2% FL Decrease T cells Pan et al. (2017) and macrophages Lee el al., 2021
ARID1A SWI/SNF component 10% DLBCL IFN, PDL1 Increase of CD8+ T cells Shen et al. (2018)
11% FL
HIST1H1C/E Linker histone 26% DLBCL NANOG, SOX2, PRC2 Not yet explored
44% FL