TABLE 1.
The most common mutations of epigenetic factors and their effect on the tumor microenvironment.
Epigenetic modifiers | Function | Mutation frequency | Affected genes linked to immune signaling | Changes in TME |
---|---|---|---|---|
KMT2D | H3K4 methyltransferase | 30% DLBCL | CD40, IL-10-IL6 | Increase of exhausted CD8+ T cells Brisou el al. (2018) and of effector immune cells Wang et al. (2020) |
80% FL | Decrease in Treg cells Wang et al. (2020) | |||
KMT2C | H3K4 methyltransferase | 5% DLBCL | IL1, GPX8, GSTA4, GSSTT1, ETS/PU.1, IRF, RUNX, AP-1 | Increase of CD8+ T cells and of effector immune cells Liu et al. (2021); Zhang et al. (2021) |
13% FL | Decrease in Treg cells Liu et al. (2021); Zhang et al. (2021) | |||
CREBBP | Lysine acetyltransferase | 15% DLBCL | MHC II, CIITA, CD74, CD40, PDL1, IFN | Decrease CD4+ T cells Green el al. (2015) |
60% FL | ||||
EP300 | Lysine acetyltransferase | 5% DLBCL | E2F1, CDC25B, CDKN1A, PDNA, CDT1, DNA2, RADE51, XRCC1 | Increase of M2 macrophages Huang el al. (2021) |
15% FL | Decrease in Treg cells Liu et al. (2013) | |||
EZH2 | H3K27 methyltransferase | 25% DLBCL | CIITA, NLRC5, Th1-type chemokines | Increase in FDCs Béguelin et al. (2020) |
10–25% FL | Decrease in TFH cells Béguelin et al. (2020) | |||
TET2 | Methylcytosine dioxygenase 2 | 10% DLBCL | CD40, IL-10-IL6, MHC II | Increase of CD8+ T cells memory Tsagaratou et al. (2017) and NK cells Carty et al. (2018) |
2% FL | Decrease T cells Pan et al. (2017) and macrophages Lee el al., 2021 | |||
ARID1A | SWI/SNF component | 10% DLBCL | IFN, PDL1 | Increase of CD8+ T cells Shen et al. (2018) |
11% FL | ||||
HIST1H1C/E | Linker histone | 26% DLBCL | NANOG, SOX2, PRC2 | Not yet explored |
44% FL |