Table 5.
Performance and Accuracy of isONclust for the ALZ and Oxford Nanopore Technologies Data Sets Using Reads with Fixed Quality Values
| Data set | QV | Accuracy |
%NS reads | No. of
clusters |
Runtime (minutes) | ||||
|---|---|---|---|---|---|---|---|---|---|
| V | c | h | ARI | NS | S | ||||
| ALZ | 7 | 0.945 | 0.910 | 0.982 | 0.688 | 96.9 | 20,869 | 25,392 | 227 |
| ALZ | 10 | 0.942 | 0.899 | 0.99 | 0.676 | 96.4 | 23,325 | 29,316 | 265 |
| ALZ | 20 | 0.922 | 0.862 | 0.992 | 0.611 | 95.1 | 27,968 | 39,895 | 556 |
| ALZ | 30 | 0.705 | 0.544 | 0.999 | 0.020 | 21.1 | 7867 | 642,658 | 283 |
| ONT | 7 | 0.845 | 0.790 | 0.909 | 0.438 | 95.2 | 38,510 | 42,544 | 1467 |
| ONT | 10 | 0.868 | 0.790 | 0.963 | 0.299 | 90.7 | 45,493 | 82,530 | 2641 |
| ONT | 20 | — | — | — | — | — | — | — | >10,080 |
| ONT | 30 | — | — | — | — | — | — | — | >10,080 |
%NS is the percentage of reads in nonsingleton clusters. The number of clusters is split between NS (nonsingleton clusters) and S (singleton clusters).
ALZ, Alzheimer.