TABLE 1.

The numbers of differentially expressed genes (DEGs, Log₂FC > 1.58 and FDR < 0.01) throughout ‘O’Neal’ flower bud and fruit development for each comparison.

Comparisons	Upregulated DEGs	Downregulated DEGs	Total DEGs
ONIII vs. ONS0	10,039	9,017	19,056
ONIV vs. ONS0	8,833	5,776	14,609
ONS1 vs. ONS0	9,196	11,858	21,054
ONS2 vs. ONS0	9,515	12,122	21,637
ONS4 vs. ONS0	8,914	10,555	19,469
ONS5 vs. ONS0	10,841	9,189	20,030
ONS6 vs. ONS0	12,146	9,918	22,064

ONIII, ONIV, ONS0, ONS1, ONS2, ONS4, ONS5, and ONS6 represented the samples collected from corresponding developmental stages. FC indicated fold change; FDR indicated false discovery rate.