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. 2022 Feb 22;65(1):55–67. doi: 10.5194/aab-65-55-2022

Table 1.

Detail of PCR primers utilized in this study along with the corresponding annealing temperature for PCR amplification.

Genes Reference Primer pair with sequence (5 –3 ) a Primer TA b Amplicon
      length (nt) ( C) size c (bp)
circRNA-0100
Yin et al. (2019)
F:GCTCGGAGTTGGCATTCATC
20
57
144
 
 
R:TCAACTAATCCGTAACAGGTCAA
20
 
 
CHD9
XM_005691972.3 in GenBank
F:ACTTGGGTGCAGAATTTGAAC
21
55
181
 
 
R:AACTGAGAGTGTGGCGATAAC
21
 
 
Keratin 6
Yin et al. (2020)
F:CAGTCGCAGCCTCTACAACCT
21
56
159
 
 
R:CAAATGCCACCTCCATAACCA
21
 
 
Keratin 7
Yin et al. (2020)
F:GAGTTTGTGGTGTTGAAGAA
20
56
194
 
 
R:AAGTCCAGGGAGCGGTTGTT
20
 
 
Keratin 8
Yin et al. (2020)
F:TCCTTCAGCAGCCGCTCCTA
20
58
160
 
 
R:CTGTAATGCCCCCCAAACCT
20
 
 
Keratin 16
Yin et al. (2020)
F:CCTTTGTGGCTAGTGGTATG
20
55
188
 
 
R:CAGTTTCAGGGGTTGCTTAT
20
 
 
Keratin 17
Yin et al. (2020)
F:GGGGAATGGAAACAGAGGAG
20
56
112
 
 
R:GAGGAGAGAAGCCCAAGATG
20
 
 
KLF5
KU041751 in GenBank
F:CCACCTCCATCCTATGCTGC
20
56
134
 
 
R:TCCAAATCGGGGTTACTCCT
20
 
 
UBC
Bai et al. (2014)
F:GCATTGTTGGGTTCCTGTGT
20
52
90
 
 
R:TTTGCATTTTGACCTGTGAG
20
 
 
YWHAZ
Bai et al. (2014)
F:TGTAGGAGCCCGTAGGTCATCT
22
56
102
 
 
R:TTCTCTCTGTATTCTCGAGCCATCT
25
 
 
SDHA
Bai et al. (2014)
F:AGCACTGGAGGAAGCACAC
19
53
105
 
 
R:CACAGTCGGTCTCGTTCAA
19
 
 
KLF5 d
The present study
F:TTAGTTTAATTTGTTAGAGAGGTTGTG
27
54
262
 
 
R:TACCCCACRACTACTAACACTTA
23
 
 
miR-20b-5p
MIMAT0036056 in miRNAsong
F:CGCAAAGTGCTCACAGTGCAGGTAG e
25
63
NA
miR-29a-3p
MIMAT0036113 in miRNAsong
F:CGTAGCACCATCTGAAATCGGTT
23
61
NA
miR-153-5p
MIMAT0035983 in miRNAsong
F:CGTTGCATAGTCACAAAAGTGATC
24
60
NA
miR-24-3p
MIMAT0036091 in miRNAsong
F:CGTGGCTCAGTTCAGCAGGAAC
22
60
NA
let-7c-3p
MIMAT0035885 in miRNAsong
F:CGCTGTACAACCTTCTAGCTTTCC
24
60
NA
let-7d-5p
Bai et al. (2016)
F:CGAGAGGTAGTAGGTTGCATAGTT
24
62
NA
miR-26a-5p
Bai et al. (2016)
F:CGTTCAAGTAATCCAGGATAGGCT
24
61
NA
miR-15a-5p Bai et al. (2016) F:CGTAGCAGCACATAATGGTTTGTG 24 63 NA

a  F: forward, R: reverse. b  TA: annealing temperature. c  NA: not available. d  KLF5 was used for the designing of BSP primers. e  miRNAsong: https://www2.med.muni.cz/histology/miRNAsong/index.php last access: 16 April 2021.