Skip to main content
. 2022 Feb 28;3(1):101200. doi: 10.1016/j.xpro.2022.101200
REAGENT or RESOURCE SOURCE IDENTIFIER
Chemicals, peptides,and recombinant proteins

DMSO Sigma-Aldrich Cat#D8418
PEG 3350 Merck Cat#1546547
KI Merck Cat#221945
LB media VWR Life Science Cat#J104
LB Agar Merck Cat#L3027
XL1-Blue cells Agilent Cat#200150
IPTG VWR Life Science Cat#0487-100G
PMSF Gold Biotechnology Cat#P-470-25
Protease inhibitor cocktail Roche Cat#11873580001
IANBD amide Thermo Fisher Scientific Cat#D2004
DTT Gold Biotechnology Cat#DTT25
TCEP Sigma-Aldrich Cat#C4706
Bradford Assay Reagent Bio-Rad Cat#500-0006
Acrylamide Merck Cat#110784
Na2S2O3.5H2O Merck Cat#1615107
Co2+ affinity resin Takara Bio Cat#635504
Ni-NTA affinity resin QIAGEN Cat#30230
Ludox Sigma-Aldrich Cat#420832
NATA Merck Cat#A6501
Imidazole VWR Lifescience Cat#97064-626

Critical commercial assays

PCR Kit Merck Cat#71086-3
Miniprep Kit QIAGEN Cat#27106

Software and algorithms

GC content and Tm calculation Integrated DNA Technologies https://www.idtdna.com/pages
DNA secondary structure predictor Integrated DNA Technologies https://eu.idtdna.com/calc/analyzer
Confirmation of DNA sequence Eurofins https://www.eurofins.com
OriginPro 8 Origin Lab https://www.originlab.com/demodownload.aspx
Decay Analysis version 2018 Smith et al. (2017) https://doi.org/10.7488/ds/2093
Matlab 2017a MathWorks https://www.mathworks.com/products/matlab.html

Other

Quick guide to different kinds of buffer solution at different pH. Sigma-Aldrich https://www.sigmaaldrich.com/IN/en/technical-documents/protocol/protein-biology/protein-concentration-and-buffer-exchange/buffer-reference-center
Quick guide to salt selection for buffer preparation at different pH. Sigma-Aldrich https://www.sigmaaldrich.com/IN/en/technical-documents/technical-article/protein-biology/protein-concentration-and-buffer-exchange/salt-selection-and-buffer-preparation
PD10 columns Cytiva Cat#GE 17-0851-01
PCR grade water Sigma-Aldrich Cat#W4502
Syringes Merck Cat#Z683531
Syringe filter (0.22 μM) Merck Cat#SLGV033RS
Filter unit (0.22 μM) Merck Cat#S2GPU02RE
Fernbach culture flask Corning Cat#4423-2XL
Filtration (Amicon) concentrator Merck Cat#UFC903024
Cat#UFC901024
Autoclave tape Sigma-Aldrich Cat#A2549
Amber glass vials Merck Cat#854172
Amber eppendorf tubes Tarsons Cat#500013
Primer resource Integrated DNA Technologies https://www.idtdna.com/pages
SDS-PAGE Protein Standard Bio-Rad Cat#1610374
Ultracentrifuge tube Thermo Scientific Cat#314460
Quartz Cuvette Hellma Analytics Cat#104-10-40-QS
Shaker incubator Incubation and cell growth Scigenics Biotech (Orbitek LT)
Big volume shaker Incubation, cell growth, and protein expression Scigenics Biotech (LE4676-AH)
Rotator Mixing samples Labnet H5500
Sonicator Cell lysis Hielscher (UP100H)
Sonicator probe Cell lysis Sonotrode MS7
Homogenizer/ Microfluidizer Cell lysis or homogenization Microfluidics LM-20
Ultracentrifuge Separation Thermofisher Scientific (Sorvall wx+)
Ultracentrifuge rotor Separation Thermo Fisher Scientific (T647.5)
Refrigerated table-top centrifuge Spinning down cells and for concentrating proteins Thermo Scientific Sorvall ST4 Plus (75009911)
Refrigerated table-top centrifuge rotor Spinning down cells TX-1000 Swinging Bucket Rotor (75003017)
Refrigerated table-top centrifuge rotor Concentrating proteins Fiberlite F15-6X 100Y Fixed angle rotor (75003698)
Microvolume spectrophotometer Protein quantification DeNovix (DS-11+)
SEC Protein purification Cytiva (AktaPure 25M)
Spectrofluorometer Fluorescence measurements Hitachi F7000
NanoLED# Light source for lifetime measurements HORIBA (NanoLED-280; NanoLED-295; NanoLED-460)