| Antibodies |
|
| Rabbit polyclonal anti-GPT2 |
Proteintech |
16757-1-AP; RRID:AB_2112098
|
| Rabbit polyclonal anti-Akt |
Cell Signaling |
#9272; RRID:AB_329827
|
| Rabbit polyclonal anti-Phospho-Akt (Ser473) |
Cell Signaling |
#9271;RRID:AB_329825
|
| Rabbit polyclonal anti-p70 S6 Kinase |
Cell Signaling |
#9202; RRID:AB_331676
|
| Rabbit polyclonal anti-Phospho-p70 S6 Kinase (Thr389) |
Cell Signaling |
#9205; RRID:AB_330944
|
| Mouse monoclonal anti-Myosin (Skeletal, Slow) |
Sigma-Aldrich |
M8421;RRID:AB_477248
|
| Mouse monoclonal anti-Skeletal Myosin (FAST) |
Sigma-Aldrich |
M4276;RRID:AB_477190
|
| Mouse monoclonal anti-Myosin Heavy Chain Type IIA |
DSHB |
SC-71; RRID:AB_2147165
|
| Mouse monoclonal anti-Myosin Heavy Chain Type IIB |
DSHB |
BF-F3; RRID:AB_2266724
|
| Goat anti-Mouse IgG (H + L) Alexa Fluor 488 |
Invitrogen™ |
A-11001; RRID:AB_2534069
|
| Goat anti-Mouse IgM (Heavy chain) Alexa Fluor 555 |
Invitrogen™ |
A21426; RRID:AB_2535847
|
| Rabbit polyclonal anti-Laminin |
Abcam |
Ab11575; RRID:AB_298179
|
| Rabbit polyclonal anti-GAPDH |
Elabscience |
E-AB-20059; RRID:AB_2905551
|
| Mouse monoclonal Anti-Flag |
Sigma-Aldrich |
F3165; RRID:AB_259529
|
| Anti-Thyroid hormone receptor antibody (C3)-Chip Grade |
ABCAM |
ab-2743; RRID:AB_2043044
|
| Anti-Thyroid hormone receptor beta antibody-Chip Grade |
ABCAM |
ab-5622; RRID:AB_304991
|
|
| Chemicals, peptides, and recombinant proteins |
|
| Dulbecco'’s Modified Eagle Medium (DMEM) |
Gibco |
12491-015 |
| Fetal Bovine Serum (FBS) |
Microgem |
S1810-500 |
| Sodium pyruvate |
Sigma-Aldrich |
S8636 |
| Alanine |
Sigma-Aldrich |
A7627-1G |
| Glutamine |
Sigma-Aldrich |
G7513 |
| D-GLUCOSE (U-13C6, 99%) |
Cambridge Isotope Laboratories, Inc. |
CLM-1396 |
| L-GLUTAMINE (AMIDE-15N, 98%+) |
Cambridge Isotope Laboratories, Inc. |
NLM-557 |
| L-GLUTAMINE-13C5 99% |
Cambridge Isotope Laboratories, Inc. |
CLM-1822-H |
| Goat Serum |
Sigma-Aldrich |
G 9023 |
| Tetracycline-free Fetal Bovine Serum (Tet free FBS) |
Clontech |
631106 |
| Doxycycline |
Sigma-Aldrich |
D9891 |
| Penicillin/Streptomycin |
Gibco |
15140-122 |
| Matrigel |
Corning |
Cat# 354248 |
| MCDB |
Sigma |
Cat# M6770 |
| Ultroser |
Pall |
Cat# 15950-017 |
| Passive Lysis Buffer |
Promega |
E194A |
| Lipofectamine 2000 |
Invitrogen |
11668-019 |
| Immobilon Western Chemiluminescent HPR Substrate |
Millipore |
WBKLS0500 |
| Protein G Plus/Protein A Agarose Suspension |
Calbiochem |
IP05 |
| Trizol Reagent |
Gibco |
15596018 |
| Collagenase A |
Roche |
11088793001 |
| Dispase II |
Roche |
#04942078001 |
| Bis-acrylamide |
Sigma-Aldrich |
#M1533 |
| TEMED |
Sigma-Aldrich |
#M1533 |
| APS |
Sigma-Aldrich |
#A3678 |
| Eukitt® mounting medium |
Bio Optica |
09-00250 |
| 3,3′,5-Triiodo-L-thyronine sodium salt (T3) |
Sigma-Aldrich |
T6397-1G |
| L-Thyroxine sodium salt pentahydrate (T4) |
Sigma-Aldrich |
T2501 |
| α-Ketoglutaric acid sodium salt (AKG) |
Sigma-Aldrich |
K1875 |
| AIN-93G Modified + Gln diet |
Envigo |
223741 |
| MitoTracker™ Red CMXRos |
Invitrogen |
M7512 |
|
| Critical commercial assays |
|
| Immobilon Western Chemiluminescent HPR Substrate |
Millipore |
WBKLS0500 |
| SYBR green master mix |
Biorad |
172-5121 |
| SuperScript™ VILO™ Master Mix |
Thermo Fisher |
11755500 |
| Alanine Transaminase Activity Assay kit |
Abcam |
ab105134 |
| Dual-Luciferase Reporter Assay System |
Promega |
E1910 |
|
| Deposited data |
|
| Original western blot images |
This paper |
Mendeley Data: https://doi.org/10.17632/jfhwj4d439.1
|
|
| Experimental models: Cell lines |
|
| C2C12 |
ATCC |
CRL-1772™ |
| C2C12 TET ON D2 |
Laboratory of Monica Dentice |
|
| (Sagliocchi et al., 2019) |
N/A |
|
| Primary sorted satellite cells D2WT |
This paper |
N/A |
| Primary sorted satellite cells D2KO |
This paper |
N/A |
|
| Experimental models: Organisms/strains |
|
| C57BL/6J |
Jackson Laboratory |
Stock No:000664 |
| Gpt2tm1a(KOMP)Wtsi (GPT2KO+/-) |
UC Davis, MMRRC |
MGI:4363039
|
| TRaKO and TRbKO mice |
Laboratory of G. Williams, Imperial College (originally generated by J.Samarut, UMR) |
N/A |
| Mouse Tg:Pax7-nGFP D2WT |
(Sambasivan et al., 2009) |
MGI:5308730
|
| Mouse Tg:Pax7-nGFP D2KO |
Laboratory of Domenico Salvatore |
N/A |
|
| Oligonucleotides |
|
| Individual Oligonucleotides Listed in Table S2
|
Eurofins |
N/A |
|
| Recombinant DNA |
|
| pGL3-GPT2 promoter-LUC |
This paper |
N/A |
| TR-α FLAG |
Zavacki et al., 1996 |
N/A |
| TRPV |
Zavacki et al., 1993 |
N/A |
|
| Software and algorithms |
|
| Cell∗F Olympus Imaging Software |
Olympus |
www.soft-imaging.net |
| ImageJ 1.45s |
National Institute of Health, USA |
http://imagej.nih.gov/ij |
| X-Tile (version 3.6.1) |
Camp et al., 2004 |
http://tissuearray.org |
| Leica Application Suite LAS X Imaging Software |
Leica Microsystems |
www.leica-microsystems.com/LAS-X |
| Gene Cluster 3.0 |
(Yeung et al., 2001) |
Stanford University |
| Java TreeView (version 1.16r4) |
(Yeung et al., 2001) |
http://jtreeview.sourceforge.ne |