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. 2022 Feb 22;38(8):110409. doi: 10.1016/j.celrep.2022.110409
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Rabbit polyclonal anti-GPT2 Proteintech 16757-1-AP; RRID:AB_2112098
Rabbit polyclonal anti-Akt Cell Signaling #9272; RRID:AB_329827
Rabbit polyclonal anti-Phospho-Akt (Ser473) Cell Signaling #9271;RRID:AB_329825
Rabbit polyclonal anti-p70 S6 Kinase Cell Signaling #9202; RRID:AB_331676
Rabbit polyclonal anti-Phospho-p70 S6 Kinase (Thr389) Cell Signaling #9205; RRID:AB_330944
Mouse monoclonal anti-Myosin (Skeletal, Slow) Sigma-Aldrich M8421;RRID:AB_477248
Mouse monoclonal anti-Skeletal Myosin (FAST) Sigma-Aldrich M4276;RRID:AB_477190
Mouse monoclonal anti-Myosin Heavy Chain Type IIA DSHB SC-71; RRID:AB_2147165
Mouse monoclonal anti-Myosin Heavy Chain Type IIB DSHB BF-F3; RRID:AB_2266724
Goat anti-Mouse IgG (H + L) Alexa Fluor 488 Invitrogen™ A-11001; RRID:AB_2534069
Goat anti-Mouse IgM (Heavy chain) Alexa Fluor 555 Invitrogen™ A21426; RRID:AB_2535847
Rabbit polyclonal anti-Laminin Abcam Ab11575; RRID:AB_298179
Rabbit polyclonal anti-GAPDH Elabscience E-AB-20059; RRID:AB_2905551
Mouse monoclonal Anti-Flag Sigma-Aldrich F3165; RRID:AB_259529
Anti-Thyroid hormone receptor antibody (C3)-Chip Grade ABCAM ab-2743; RRID:AB_2043044
Anti-Thyroid hormone receptor beta antibody-Chip Grade ABCAM ab-5622; RRID:AB_304991

Chemicals, peptides, and recombinant proteins

Dulbecco'’s Modified Eagle Medium (DMEM) Gibco 12491-015
Fetal Bovine Serum (FBS) Microgem S1810-500
Sodium pyruvate Sigma-Aldrich S8636
Alanine Sigma-Aldrich A7627-1G
Glutamine Sigma-Aldrich G7513
D-GLUCOSE (U-13C6, 99%) Cambridge Isotope Laboratories, Inc. CLM-1396
L-GLUTAMINE (AMIDE-15N, 98%+) Cambridge Isotope Laboratories, Inc. NLM-557
L-GLUTAMINE-13C5 99% Cambridge Isotope Laboratories, Inc. CLM-1822-H
Goat Serum Sigma-Aldrich G 9023
Tetracycline-free Fetal Bovine Serum (Tet free FBS) Clontech 631106
Doxycycline Sigma-Aldrich D9891
Penicillin/Streptomycin Gibco 15140-122
Matrigel Corning Cat# 354248
MCDB Sigma Cat# M6770
Ultroser Pall Cat# 15950-017
Passive Lysis Buffer Promega E194A
Lipofectamine 2000 Invitrogen 11668-019
Immobilon Western Chemiluminescent HPR Substrate Millipore WBKLS0500
Protein G Plus/Protein A Agarose Suspension Calbiochem IP05
Trizol Reagent Gibco 15596018
Collagenase A Roche 11088793001
Dispase II Roche #04942078001
Bis-acrylamide Sigma-Aldrich #M1533
TEMED Sigma-Aldrich #M1533
APS Sigma-Aldrich #A3678
Eukitt® mounting medium Bio Optica 09-00250
3,3′,5-Triiodo-L-thyronine sodium salt (T3) Sigma-Aldrich T6397-1G
L-Thyroxine sodium salt pentahydrate (T4) Sigma-Aldrich T2501
α-Ketoglutaric acid sodium salt (AKG) Sigma-Aldrich K1875
AIN-93G Modified + Gln diet Envigo 223741
MitoTracker™ Red CMXRos Invitrogen M7512

Critical commercial assays

Immobilon Western Chemiluminescent HPR Substrate Millipore WBKLS0500
SYBR green master mix Biorad 172-5121
SuperScript™ VILO™ Master Mix Thermo Fisher 11755500
Alanine Transaminase Activity Assay kit Abcam ab105134
Dual-Luciferase Reporter Assay System Promega E1910

Deposited data

Original western blot images This paper Mendeley Data: https://doi.org/10.17632/jfhwj4d439.1

Experimental models: Cell lines

C2C12 ATCC CRL-1772™
C2C12 TET ON D2 Laboratory of Monica Dentice
(Sagliocchi et al., 2019) N/A
Primary sorted satellite cells D2WT This paper N/A
Primary sorted satellite cells D2KO This paper N/A

Experimental models: Organisms/strains

C57BL/6J Jackson Laboratory Stock No:000664
Gpt2tm1a(KOMP)Wtsi (GPT2KO+/-) UC Davis, MMRRC MGI:4363039
TRaKO and TRbKO mice Laboratory of G. Williams, Imperial College (originally generated by J.Samarut, UMR) N/A
Mouse Tg:Pax7-nGFP D2WT (Sambasivan et al., 2009) MGI:5308730
Mouse Tg:Pax7-nGFP D2KO Laboratory of Domenico Salvatore N/A

Oligonucleotides

Individual Oligonucleotides Listed in Table S2 Eurofins N/A

Recombinant DNA

pGL3-GPT2 promoter-LUC This paper N/A
TR-α FLAG Zavacki et al., 1996 N/A
TRPV Zavacki et al., 1993 N/A

Software and algorithms

CellF Olympus Imaging Software Olympus www.soft-imaging.net
ImageJ 1.45s National Institute of Health, USA http://imagej.nih.gov/ij
X-Tile (version 3.6.1) Camp et al., 2004 http://tissuearray.org
Leica Application Suite LAS X Imaging Software Leica Microsystems www.leica-microsystems.com/LAS-X
Gene Cluster 3.0 (Yeung et al., 2001) Stanford University
Java TreeView (version 1.16r4) (Yeung et al., 2001) http://jtreeview.sourceforge.ne