Table 4.
Striatal and hippocampal cis-eQTL transcripts for chromosome 13 and 5 QTLs. All cis-eQTLs on chromosome 13 and chromosome 5 in both the hippocampus and striatum (unadjusted p < 0.001).
| Marker | Gene | |||||||
|---|---|---|---|---|---|---|---|---|
| Brain Region | chr | pos (cM) | pos (Mb) | ID | Start (cM) | Start (Mb) | p value | FDR |
| Striatum | Chromosome 13 | 30.06 | 55.96 | H2afy | 30.07 | 56.07 | 9E-09 | 0.000221 |
| 30.06 | 55.96 | Ddx4 | 63.83 | 112.60 | 5.5E-05 | 0.435334 | ||
| 31.88 | 59.81 | H2afy | 30.07 | 56.07 | 4.53E-06 | 0.060237 | ||
| 31.88 | 59.81 | Msh3 | 47.58 | 92.21 | 0.000188 | 0.835602 | ||
| 31.94 | 60.21 | H2afy | 30.07 | 56.07 | 4.53E-06 | 0.060237 | ||
| 31.94 | 60.21 | Msh3 | 47.58 | 92.21 | 0.000188 | 0.835602 | ||
| 43.11 | 81.56 | H2afy | 30.07 | 56.07 | 2.55E-05 | 0.238048 | ||
| 43.11 | 81.56 | Msh3 | 47.58 | 92.21 | 5.93E-05 | 0.439217 | ||
| 49.36 | 95.03 | Msh3 | 47.58 | 92.21 | 3.88E-06 | 0.052652 | ||
| 49.36 | 95.03 | H2afy | 30.07 | 56.07 | 0.000262 | 0.94804 | ||
| 49.36 | 95.03 | Ccl28 | 67.52 | 119.62 | 0.000919 | 1 | ||
| 49.43 | 95.21 | Msh3 | 47.58 | 92.21 | 2.56E-05 | 0.238638 | ||
| 49.43 | 95.21 | H2afy | 30.07 | 56.07 | 0.000361 | 1 | ||
| 49.43 | 95.21 | Ccl28 | 67.52 | 119.62 | 0.000859 | 1 | ||
| 49.43 | 95.21 | Zfp953 | 34.61 | 67.34 | 0.000976 | 1 | ||
| Chr 5 | 44.06 | 83.69 | Ankrd61 | 81.21 | 143.89 | 0.000112 | 0.613657 | |
| 44.06 | 83.69 | Rfc3 | 85.59 | 151.64 | 0.000473 | 1 | ||
| 50.44 | 95.87 | Rfc3 | 85.59 | 151.64 | 0.000187 | 0.835099 | ||
| 50.44 | 95.87 | Ankrd61 | 81.21 | 143.89 | 0.000279 | 0.961505 | ||
| 65.59 | 117.38 | Ankrd61 | 81.21 | 143.89 | 0.000232 | 0.918532 | ||
| Hippocampus | Chr 13 | 30.06 | 55.96 | H2afy | 30.07 | 56.07 | 0.000436 | 0.503944 |
| 43.11 | 81.56 | Msh3 | 47.58 | 92.21 | 0.000107 | 0.462576 | ||
| 49.36 | 95.03 | Msh3 | 47.58 | 92.21 | 2.06E-05 | 0.308925 | ||
| 49.43 | 95.21 | Msh3 | 47.58 | 92.21 | 6.28E-05 | 0.434747 | ||
| 49.43 | 95.21 | Ccl28 | 67.52 | 119.62 | 0.000793 | 0.532853 | ||
| Chromosome 5 | 43.01 | 83.69 | Pf4 | 44.68 | 90.77 | 0.00054 | 0.513003 | |
| 47.44 | 95.87 | Pf4 | 44.68 | 90.77 | 0.000224 | 0.483621 | ||
| 47.44 | 95.87 | Wdr95 | 89.19 | 149.53 | 0.000253 | 0.483621 | ||
| 47.44 | 95.87 | Hopx | 41.48 | 77.09 | 0.000446 | 0.503944 | ||
| 47.44 | 95.87 | Hs3st1 | 21.11 | 39.61 | 0.000486 | 0.508738 | ||
| 47.44 | 95.87 | Wdfy3 | 48.94 | 101.83 | 0.000609 | 0.517917 | ||
| 56.95 | 117.38 | Hopx | 41.48 | 77.09 | 8.4E-05 | 0.443042 | ||
| 56.95 | 117.38 | Pus1 | 53.71 | 110.77 | 0.000909 | 0.539018 | ||
| 56.95 | 117.38 | Dnah10 | 63.77 | 124.73 | 0.000979 | 0.546122 | ||
| 60.62 | 120.43 | Dnah10 | 63.77 | 124.73 | 0.000329 | 0.493306 | ||