Table 5.

Striatal and hippocampal intron/exon-level eQTLs at peak behavioral markers for chromosome 13 and 5 candidate genes. Significant associations between feature usage of candidate genes and top associated behavioral markers (FDR <0.05).

QTL	Region	SNP	Name	Location (bp)	Element	Feature	Start (Mb)	Length (bp)	p value	FDR
Chr 13 Hotplate	Hippocampus	SBR132392332	H2afy	13:56073619–56136361	I	Intron 5	56090059	5497	1.21E-09	0.0003
		SBR132392332	H2afy	13:56073619–56136361	I	Intron 6	56088343	1415	3.20E-09	0.00072
		SBR132392332	H2afy	13:56073619–56136361	I	Intron 6	56084522	3730	5.28E-09	0.00112
		SBR132392332	H2afy	13:56073619–56136361	I	Intron 7	56083295	901	1.86E-08	0.00317
		SBR132392332	H2afy	13:56073619–56136361	E	Exon 6	56089858	201	1.15E-07	0.0148
	Striatum	SBR132392332	H2afy	13:56073619–56136361	I	Intron 7	56083295	901	1.95E-16	9.46E-11
		SBR132392332	H2afy	13:56073619–56136361	I	Intron 6	56088343	1415	3.88E-15	1.69E-09
		SBR132392332	H2afy	13:56073619–56136361	I	Intron 6	56084522	3730	1.11E-14	3.89E-09
		SBR132392332	H2afy	13:56073619–56136361	E	Exon 6	56088252	91	2.31E-12	3.72E-07
		SBR132392332	H2afy	13:56073619–56136361	I	Intron 5	56090059	5497	9.55E-12	1.42E-06
		SBR132392332	H2afy	13:56073619–56136361	I	Intron 5	56095642	482	2.44E-10	2.35E-05
		SBR132392332	H2afy	13:56073619–56136361	E	Exon 6	56089858	201	1.57E-09	0.00013
Chr 5 Brain Weight	Hipp	SBJ054695332	Acads	5:115110299–115119346	I	Intron 8	115111151	168	1.92E-10	5.74E-05
		SBJ054695332	Acads	5:115110299–115119346	I	Intron 7	115111415	222	2.27E-08	0.00376
	Striatum	SBJ054695332	Acads	5:115110299–115119346	E	Exon 9	115111094	57	1.46E-09	0.00012
		SBJ054695332	Acads	5:115110299–115119346	I	Intron 8	115111151	168	5.10E-09	0.00038
		SBJ054695332	Acads	5:115110299–115119346	I	Intron 7	115111415	222	1.22E-07	0.00675