Table 1.

The Number of Reads Containing a Maximal Exact Match of Minimum Length 25, 50, and 75 for the Reference Genome, 10, 20, 50, 100, and 200 Haplotypes

MEM	HG	HG.10		HG.20		HG.50		HG.100		HG.200
	No. of reads	No. of reads	$+$reads	No. of reads	$+$reads	No. of reads	$+$reads	No. of reads	$+$reads	No. of reads	$+$reads
25	411,665,608	412,292,276	626,668	412,383,562	91,286	412,580,107	196,545	412,678,277	98,170	412,818,387	140,110
50	309,876,128	311,825,333	1,949,205	311,986,530	161,197	312,172,012	185,482	312,298,469	126,457	312,460,499	162,030
75	253,953,551	264,406,220	10,452,669	264,941,235	535,015	265,311,230	369,995	265,510,475	199,245	265,770,839	260,364

We give the total number of reads that have an MEM (“No. of Reads”) and the number of additional reads that have an MEM (“$+$Reads”). We note that $+$Reads compare the number of MEMs of the current to the next-previous set, that is, HG.100–HG.50.

MEM, maximal exact match.