Table 2. List of BS3 crosslinks.
| XlinkX score | Type | # Crosslink spectral matches | Sequence A | Position A | Sequence B | Position B | Protein A | Protein B |
|---|---|---|---|---|---|---|---|---|
| 58,66 | Inter | 1 | [K]LHLPPGK | 100 | [K]LAATR | 274 | RFC4 | RFC1 |
| 58,64 | Inter | 3 | [K]LELNVVSSPYHLEITPSDMGNNDR | 82 | S[K]TLLNAGVK | 385 | RFC5 | RFC1 |
| 56,99 | Inter | 3 | [K]YVNTFMK | 285 | DIL[K]R | 220 | RFC2 | RFC5 |
| 56,47 | Inter | 1 | NQI[K]DFASTR | 98 | [K]LAATR | 274 | RFC3 | RFC1 |
| 52,59 | Inter | 2 | E[K]VKNFAR | 109 | TME[K]YSK | 160 | RFC2 | RFC5 |
| 50,97 | Inter | 1 | NQI[K]DFASTR | 98 | RPDANSI[K]SR | 484 | RFC3 | RFC1 |
| 48,17 | Inter | 1 | GASEALA[K]R | 182 | [K]IVKER | 269 | RFC1 | RFC5 |
| 45,16 | Inter | 1 | YT[K]NTR | 139 | [K]EEER | 267 | RFC3 | RFC1 |
| 41,65 | Inter | 1 | [K]LEEQHNIATK | 249 | YT[K]NTR | 139 | RFC1 | RFC3 |
| 91,6 | Intra | 3 | [K]LEEQHNIATK | 249 | RPDANSI[K]SR | 484 | RFC1 | RFC1 |
| 72,73 | Intra | 4 | EAELLV[K]KEEER | 266 | [K]LAATR | 274 | RFC1 | RFC1 |
| 71,87 | Intra | 12 | QLIAGMPAEGGDGEAAE[K]AR | 245 | R[K]LEEQHNIATK | 249 | RFC1 | RFC1 |
| 71,27 | Intra | 2 | E[K]FKLDPNVIDR | 495 | [K]LAATR | 274 | RFC1 | RFC1 |
| 71,03 | Intra | 1 | F[K]LDPNVIDR | 497 | [K]LAATR | 274 | RFC1 | RFC1 |
| 71,03 | Intra | 9 | [K]TSTPLILICNER | 446 | S[K]TLLNAGVK | 385 | RFC1 | RFC1 |
| 64 | Intra | 1 | EAELLV[K]KEEER | 266 | S[K]KLAATR | 273 | RFC1 | RFC1 |
| 62,71 | Intra | 1 | RPDANSI[K]SR | 484 | SA[K]YYR | 678 | RFC1 | RFC1 |
| 62,2 | Intra | 2 | YAPTNLQQVCGN[K]GSVMK | 314 | L[K]NWLANWENSKK | 321 | RFC1 | RFC1 |
| 61,3 | Intra | 4 | EAELLVK[K]EEERSK | 267 | [K]LAATR | 274 | RFC1 | RFC1 |
| 60,15 | Intra | 1 | FAFACNQSN[K]IIEPLQSR | 149 | VT[K]NLAQVK | 275 | RFC4 | RFC4 |
| 60,15 | Intra | 3 | YS[K]LSDEDVLKR | 165 | VT[K]NLAQVK | 275 | RFC4 | RFC4 |
| 58,98 | Intra | 1 | IPATV[K]SGFTR | 767 | HAG[K]DGSGVFR | 340 | RFC1 | RFC1 |
| 58,55 | Intra | 4 | GASEALA[K]R | 182 | VT[K]SISSK | 190 | RFC1 | RFC1 |
| 57,1 | Intra | 3 | RPDANSI[K]SR | 484 | [K]EEER | 267 | RFC1 | RFC1 |
| 56,99 | Intra | 1 | KLEEQHNIAT[K]EAELLVK | 259 | [K]EEER | 267 | RFC1 | RFC1 |
| 56,99 | Intra | 1 | DNVVREED[K]LWTVK | 296 | [K]EEER | 267 | RFC1 | RFC1 |
| 56,41 | Intra | 1 | [K]YNSMTHPVAIYR | 773 | LGTSTD[K]IGLR | 698 | RFC1 | RFC1 |
| 53,33 | Intra | 1 | Y[K]CVIINEANSLTK | 136 | L[K]IDVR | 69 | RFC5 | RFC5 |
| 52,59 | Intra | 2 | [K]ASSPTVKPASSK | 77 | [K]TKPSSK | 90 | RFC1 | RFC1 |
| 52,59 | Intra | 2 | HAG[K]DGSGVFR | 340 | GSVM[K]LK | 319 | RFC1 | RFC1 |
| 52,59 | Intra | 2 | ASSPTV[K]PASSK | 84 | [K]TKPSSK | 90 | RFC1 | RFC1 |
| 51,79 | Intra | 2 | [K]LEEQHNIATK | 249 | [K]LAATR | 274 | RFC1 | RFC1 |
| 50,97 | Intra | 1 | [K]TATSKPGGSK | 845 | S[K]TLLNAGVK | 385 | RFC1 | RFC1 |
| 50,34 | Intra | 1 | KMPVSNVIDVSETPEGE[K]K | 68 | LPLPA[K]R | 75 | RFC1 | RFC1 |
| 49,59 | Intra | 4 | EKF[K]LDPNVIDR | 497 | RPDANSI[K]SR | 484 | RFC1 | RFC1 |
| 47,92 | Intra | 1 | LGTSTD[K]IGLR | 698 | [K]LAATR | 274 | RFC1 | RFC1 |
| 47,92 | Intra | 1 | S[K]TLLNAGVK | 385 | [K]LAATR | 274 | RFC1 | RFC1 |
| 47,92 | Intra | 1 | GASEALA[K]R | 182 | [K]LAATR | 274 | RFC1 | RFC1 |
| 47,85 | Intra | 2 | SISS[K]TSVVVLGDEAGPK | 195 | [K]LEEQHNIATK | 249 | RFC1 | RFC1 |
| 47,85 | Intra | 1 | [K]YNSMTHPVAIYR | 773 | [K]TATSKPGGSK | 845 | RFC1 | RFC1 |
| 46,57 | Intra | 4 | R[K]LEEQHNIATK | 249 | GASEALA[K]R | 182 | RFC1 | RFC1 |
| 46,35 | Intra | 1 | [K]ASSPTVKPASSK | 77 | VT[K]SISSK | 190 | RFC1 | RFC1 |
| 45,16 | Intra | 1 | YAPTNLQQVCGN[K]GSVMK | 314 | [K]EEER | 267 | RFC1 | RFC1 |
| 45,16 | Intra | 1 | E[K]FKLDPNVIDR | 495 | [K]EEER | 267 | RFC1 | RFC1 |
| 45,16 | Intra | 2 | [K]LEEQHNIATK | 249 | [K]EEER | 267 | RFC1 | RFC1 |
| 44,72 | Intra | 1 | E[K]FKLDPNVIDR | 495 | RPDANSI[K]SR | 484 | RFC1 | RFC1 |
| 44,45 | Intra | 1 | YAPTNLQQVCGN[K]GSVMK | 314 | [K]LEEQHNIATK | 249 | RFC1 | RFC1 |
| 44,14 | Intra | 2 | NLP[K]MRPFDR | 462 | S[K]TLLNAGVK | 385 | RFC1 | RFC1 |
| 44,14 | Intra | 1 | RPDANSI[K]SR | 484 | GASEALA[K]R | 182 | RFC1 | RFC1 |
| 44,12 | Intra | 1 | [K]LEEQHNIATK | 249 | [K]TKPSSK | 90 | RFC1 | RFC1 |
| 43,7 | Intra | 1 | NLP[K]MRPFDR | 462 | LGTSTD[K]IGLR | 698 | RFC1 | RFC1 |
| 43,7 | Intra | 1 | [K]YNSMTHPVAIYR | 773 | TATS[K]PGGSK | 850 | RFC1 | RFC1 |
| 41,98 | Intra | 2 | LGTSTD[K]IGLR | 698 | RPDANSI[K]SR | 484 | RFC1 | RFC1 |
| 41,98 | Intra | 1 | [K]LEEQHNIATK | 249 | F[K]LDPNVIDR | 497 | RFC1 | RFC1 |
| 41,98 | Intra | 1 | HAG[K]DGSGVFR | 340 | VT[K]SISSK | 190 | RFC1 | RFC1 |
| 41,94 | Intra | 1 | NQI[K]DFASTR | 98 | YT[K]NTR | 139 | RFC3 | RFC3 |
| 40,95 | Intra | 1 | NLAQV[K]ESVR | 281 | IHKLNN[K]A | 322 | RFC4 | RFC4 |
| 40,92 | Intra | 1 | KLPLPA[K]R | 75 | [K]EEER | 267 | RFC1 | RFC1 |