TABLE 3.
Gene annotations in PmaES4326 ICEs.
| Number | Name | Type | Minimum | Maximum | Length | Direction |
| tRNA-Asn | tRNA | 2,862 | 2,937 | 76 | Forward | |
| tRNA-Pro | tRNA | 2,967 | 3,043 | 77 | Forward | |
| tRNA-Lys | tRNA | 3,049 | 3,124 | 76 | Forward | |
| tRNA-Pro | tRNA | 3,220 | 3,296 | 77 | Forward | |
| 1 | Tyrosine-type recombinase/integrase | CDS | 3,625 | 5,064 | 1,440 | Reverse |
| 2 | DNA-binding domain-containing protein | CDS | 5,061 | 6,992 | 1,932 | Reverse |
| 3 | DUF3742 family protein | CDS | 7,604 | 8,005 | 402 | Forward |
| 4 | traG conjugal transfer protein | CDS | 8,047 | 9,585 | 1,539 | Reverse |
| 5 | Hypothetical protein | CDS | 9,582 | 9,950 | 369 | Reverse |
| 6 | Integrating conjugative element protein | CDS | 9,953 | 11,323 | 1,371 | Reverse |
| 7 | TIGR03756 family integrating conjugative elementprotein | CDS | 11,344 | 12,282 | 939 | Reverse |
| 8 | TIGR03757 family integrating conjugative elementprotein | CDS | 12,279 | 12,755 | 477 | Reverse |
| 9 | Hypothetical protein | CDS | 13,053 | 13,241 | 189 | Forward |
| 10 | Hypothetical protein | CDS | 13,259 | 13,798 | 540 | Forward |
| 11 | Hypothetical protein | CDS | 13,839 | 14,393 | 555 | Forward |
| 12 | Hypothetical protein | CDS | 14,752 | 15,297 | 546 | Reverse |
| 13 | Thioredoxin domain-containing protein | CDS | 15,609 | 16,307 | 699 | Reverse |
| 14 | Hypothetical protein | CDS | 16,304 | 16,603 | 300 | Reverse |
| 15 | Conjugative transfer ATPase | CDS | 16,600 | 19,347 | 2,748 | Reverse |
| 16 | TIGR03751 family conjugal transfer lipoprotein | CDS | 19,557 | 20,012 | 456 | Reverse |
| 17 | TIGR03752 family integrating conjugative elementprotein | CDS | 19,990 | 21,486 | 1,497 | Reverse |
| 18 | TIGR03749 family integrating conjugative elementprotein | CDS | 21,476 | 22,399 | 924 | Reverse |
| 19 | TIGR03746 family integrating conjugative elementprotein | CDS | 22,396 | 23,064 | 669 | Reverse |
| 20 | TIGR03750 family conjugal transfer protein | CDS | 23,061 | 23,453 | 393 | Reverse |
| 21 | TIGR03745 family integrating conjugative elementmembrane protein | CDS | 23,469 | 23,837 | 369 | Reverse |
| 22 | TIGR03758 family integrating conjugative elementprotein | CDS | 23,857 | 24,096 | 240 | Reverse |
| 23 | Conjugal transfer protein | CDS | 24,093 | 24,458 | 366 | Reverse |
| 24 | DUF4177 domain-containing protein | CDS | 24,538 | 24,870 | 333 | Reverse |
| 25 | Hypothetical protein | CDS | 25,041 | 25,472 | 432 | Forward |
| 26 | hopAO type III effector | CDS | 25,861 | 26,877 | 1,017 | Reverse |
| 27 | UvrD-helicase domain-containing protein | CDS | 27,062 | 28,519 | 1,458 | Reverse |
| 28 | TIGR03747 family integrating conjugative elementmembrane protein | CDS | 28,529 | 29,278 | 750 | Reverse |
| 29 | traD | CDS | 29,318 | 31,477 | 2,160 | Reverse |
| 30 | Integrating conjugative element protein | CDS | 31,489 | 31,992 | 504 | Reverse |
| 31 | Transglycosylase SLT domain-containing protein | CDS | 31,989 | 32,546 | 558 | Reverse |
| 32 | TIGR03759 family integrating conjugative element protein | CDS | 32,531 | 33,277 | 747 | Reverse |
| 33 | Hypothetical protein | CDS | 33,286 | 33,990 | 705 | Reverse |
| 34 | dcm | CDS | 34,335 | 35,390 | 1,056 | Forward |
| 35 | vsr | CDS | 35,329 | 35,766 | 438 | Reverse |
| 36 | DNA mismatch repair protein | CDS | 35,850 | 37,871 | 2,022 | Forward |
| 37 | DEAD/DEAH box helicase family protein | CDS | 37,973 | 40,231 | 2,259 | Reverse |
| 38 | Class I SAM-dependent methyltransferase | CDS | 40,335 | 41,786 | 1,452 | Reverse |
| 39 | Hypothetical protein | CDS | 41,816 | 42,415 | 600 | Reverse |
| 40 | DUF3275 family protein | CDS | 42,536 | 43,147 | 612 | Reverse |
| 41 | Hypothetical protein | CDS | 43,248 | 43,610 | 363 | Reverse |
| 42 | Hypothetical protein | CDS | 43,672 | 43,986 | 315 | Reverse |
| 43 | DUF3577 domain-containing protein | CDS | 44,290 | 44,859 | 570 | Reverse |
| 44 | Hypothetical protein | CDS | 44,879 | 45,403 | 525 | Forward |
| 45 | Hypothetical protein | CDS | 45,480 | 45,848 | 369 | Reverse |
| 46 | Regulator | CDS | 46,056 | 46,589 | 534 | Reverse |
| 47 | topB | CDS | 47,650 | 49,671 | 2,022 | Reverse |
| 48 | Hypothetical protein | CDS | 49,794 | 50,363 | 570 | Reverse |
| 49 | Hypothetical protein | CDS | 50,657 | 51,094 | 438 | Reverse |
| 50 | ATP-dependent helicase | CDS | 51,329 | 53,281 | 1,953 | Reverse |
| 51 | Hypothetical protein | CDS | 53,284 | 54,849 | 1,566 | Reverse |
| 52 | CrpP family protein | CDS | 55,287 | 55,466 | 180 | Reverse |
| 53 | Hypothetical protein | CDS | 55,471 | 55,644 | 174 | Reverse |
| 54 | AAA family ATPase | CDS | 55,991 | 56,941 | 951 | Reverse |
| 55 | hopAB type III effector | CDS | 56,958 | 58,115 | 1,158 | Reverse |
| 56 | IS91 family transposase | CDS | 58,481 | 59,101 | 621 | Reverse |
| 57 | RulB protein | CDS | 59,132 | 59,200 | 69 | Reverse |
| 58 | IS481 family transposase | CDS | 59,217 | 60,878 | 1,662 | Reverse |
| 59 | Recombinase family protein | CDS | 60,859 | 61,434 | 576 | Reverse |
| 60 | Hypothetical protein | CDS | 61,751 | 62,224 | 474 | Reverse |
| 61 | Single-stranded DNA-binding protein | CDS | 62,425 | 62,886 | 462 | Reverse |
| 62 | Phage regulatory protein | CDS | 62,898 | 63,730 | 833 | Reverse |
| 63 | DUF3158 family protein | CDS | 63,736 | 64,257 | 522 | Reverse |
| 64 | TIGR03761 family integrating conjugative elementprotein | CDS | 64,294 | 65,073 | 780 | Reverse |
| 65 | Hypothetical protein | CDS | 65,066 | 65,662 | 597 | Reverse |
| 66 | Hypothetical protein | CDS | 65,992 | 67,353 | 1,362 | Reverse |
| 67 | DUF2857 family protein | CDS | 67,350 | 68,087 | 738 | Reverse |
| 68 | parBchromosome partitioning protein | CDS | 68,124 | 69,884 | 1,761 | Reverse |
| 69 | Arc family DNA-binding protein | CDS | 69,887 | 70,204 | 318 | Reverse |
| 70 | Hypothetical protein | CDS | 70,382 | 70,786 | 405 | Reverse |
| 71 | Hypothetical protein | CDS | 70,788 | 71,117 | 330 | Reverse |
| 72 | Hypothetical protein | CDS | 71,437 | 72,123 | 687 | Reverse |
| 73 | Hypothetical protein | CDS | 72,563 | 73,153 | 591 | Reverse |
| 74 | dnaB | CDS | 73,150 | 74,496 | 1,347 | Reverse |
| 75 | AAA family ATPase | CDS | 74,554 | 75,414 | 861 | Reverse |
| tRNA-Pro | tRNA | 75,651 | 75,727 | 77 | Forward | |
| 76 | Tyrosine-type recombinase/integrase | CDS | 76,041 | 77,495 | 1,455 | Reverse |
| 77 | DNA-binding domain-containing protein | CDS | 77,492 | 79,423 | 1,932 | Reverse |
| 78 | DUF3742 family protein | CDS | 80,037 | 80,438 | 402 | Forward |
| 79 | traG conjugal transfer protein | CDS | 80,499 | 82,031 | 1,533 | Reverse |
| 80 | Hypothetical protein | CDS | 82,028 | 82,402 | 375 | Reverse |
| 81 | Integrating conjugative element protein | CDS | 82,405 | 83,772 | 1,368 | Reverse |
| 82 | TIGR03756 family integrating conjugative elementprotein | CDS | 83,793 | 84,731 | 939 | Reverse |
| 83 | TIGR03757 family integrating conjugative elementprotein | CDS | 84,728 | 85,159 | 432 | Reverse |
| 84 | DUF1440 domain-containing protein | CDS | 85,713 | 86,201 | 489 | Reverse |
| 85 | Lytic murein transglycosylase | CDS | 86,453 | 87,694 | 1,242 | Reverse |
| 86 | Hypothetical protein | CDS | 88,186 | 88,395 | 210 | Reverse |
| 87 | IS5 family transposase | CDS | 88,841 | 89,818 | 978 | Reverse |
| 88 | Carbon storage regulator | CDS | 90,586 | 90,810 | 225 | Forward |
| 89 | TraR/DksA family transcriptional regulator | CDS | 90,846 | 91,262 | 417 | Forward |
| 90 | Hypothetical protein | CDS | 91,297 | 91,518 | 222 | Forward |
| 91 | GNAT family N-acetyltransferase | CDS | 92,339 | 92,830 | 492 | Forward |
| 92 | AAA family ATPase | CDS | 93,208 | 93,489 | 282 | Forward |
| 93 | tnpB | CDS | 93,794 | 94,150 | 357 | Forward |
| 94 | IS66 family transposase | CDS | 94,167 | 95,699 | 1,533 | Forward |
| 95 | IS5 family transposase | CDS | 95,741 | 96,382 | 642 | Reverse |
| 96 | AAA family ATPase | CDS | 96,453 | 97,271 | 819 | Forward |
| 97 | (p)ppGpp synthetase | CDS | 97,274 | 98,092 | 819 | Forward |
| 98 | Thioredoxin domain-containing protein | CDS | 98,266 | 98,964 | 699 | Reverse |
| 99 | Hypothetical protein | CDS | 98,961 | 99,260 | 300 | Reverse |
| 100 | Conjugative transfer ATPase | CDS | 99,257 | 102,004 | 2,748 | Reverse |
| 101 | TIGR03751 family conjugal transfer lipoprotein | CDS | 102,214 | 102,669 | 456 | Reverse |
| 102 | TIGR03752 family integrating conjugative elementprotein | CDS | 102,647 | 104,143 | 1,497 | Reverse |
| 103 | TIGR03749 family integrating conjugative elementprotein | CDS | 104,133 | 105,056 | 924 | Reverse |
| 104 | TIGR03746 family integrating conjugative elementprotein | CDS | 105,053 | 105,721 | 669 | Reverse |
| 105 | TIGR03750 family conjugal transfer protein | CDS | 105,718 | 106,110 | 393 | Reverse |
| 106 | TIGR03745 family integrating conjugative elementmembrane protein | CDS | 106,126 | 106,494 | 369 | Reverse |
| 107 | TIGR03758 family integrating conjugative elementprotein | CDS | 106,514 | 106,753 | 240 | Reverse |
| 108 | Conjugal transfer protein | CDS | 106,750 | 107,115 | 366 | Reverse |
| 109 | DUF4177 domain-containing protein | CDS | 107,195 | 107,525 | 331 | Reverse |
| 110 | MFS transporter | CDS | 108,102 | 109,286 | 1,185 | Forward |
| 111 | Transposase | CDS | 109,422 | 109,937 | 516 | Forward |
| 112 | Amidinotransferase | CDS | 110,235 | 111,335 | 1,101 | Forward |
| 113 | Serine kinase - nikkomycin | CDS | 111,422 | 112,675 | 1,254 | Forward |
| 114 | Serine kinase | CDS | 112,728 | 113,972 | 1,245 | Forward |
| 115 | hopDtype III effector protein | CDS | 114,438 | 116,555 | 2,118 | Forward |
| 116 | hopQtype III effector protein | CDS | 116,671 | 118,014 | 1,344 | Reverse |
| 117 | Phosphoribulokinase | CDS | 118,048 | 118,365 | 318 | Forward |
| 118 | UvrD-helicase domain-containing protein | CDS | 118,603 | 120,060 | 1,458 | Reverse |
| 119 | TIGR03747 family integrating conjugative elementmembrane protein | CDS | 120,070 | 120,819 | 750 | Reverse |
| 120 | traD | CDS | 120,859 | 123,018 | 2,160 | Reverse |
| 121 | Integrating conjugative element protein | CDS | 123,030 | 123,536 | 507 | Reverse |
| 122 | Tansglycosylase SLT domain-containing protein | CDS | 123,533 | 124,090 | 558 | Reverse |
| 123 | TIGR03759 family integrating conjugative elementprotein | CDS | 124,075 | 124,821 | 747 | Reverse |
| 124 | Hypothetical protein | CDS | 124,830 | 125,534 | 705 | Reverse |
| 125 | IS5 family transposase | CDS | 125,711 | 126,561 | 851 | Reverse |
| 126 | Hypothetical protein | CDS | 126,700 | 127,581 | 882 | Forward |
| 127 | Hypothetical protein | CDS | 127,745 | 128,107 | 363 | Reverse |
| 128 | DEAD/DEAH box helicase family protein | CDS | 128,202 | 130,460 | 2,259 | Reverse |
| 129 | Class I SAM-dependent methyltransferase | CDS | 130,564 | 132,015 | 1,452 | Reverse |
| 130 | Hypothetical protein | CDS | 132,045 | 132,644 | 600 | Reverse |
| 131 | DUF3275 family protein | CDS | 132,770 | 133,381 | 612 | Reverse |
| 132 | Hypothetical protein | CDS | 133,482 | 133,844 | 363 | Reverse |
| 133 | DUF3577 domain-containing protein | CDS | 134,172 | 134,726 | 555 | Reverse |
| 134 | Hypothetical protein | CDS | 134,746 | 135,270 | 525 | Forward |
| 135 | Hypothetical protein | CDS | 135,347 | 135,715 | 369 | Reverse |
| 136 | Regulator | CDS | 135,923 | 136,456 | 534 | Reverse |
| 137 | topB | CDS | 137,517 | 139,538 | 2,022 | Reverse |
| 138 | Hypothetical protein | CDS | 139,661 | 140,230 | 570 | Reverse |
| 139 | Hypothetical protein | CDS | 140,774 | 141,457 | 684 | Forward |
| 140 | ATP-dependent helicase | CDS | 141,779 | 143,731 | 1,953 | Reverse |
| 141 | Hypothetical protein | CDS | 143,734 | 145,259 | 1,526 | Reverse |
| 142 | CrpP family protein | CDS | 145,697 | 145,897 | 201 | Reverse |
| 143 | IS3 family transposase | CDS | 146,020 | 147,260 | 1,241 | Forward |
| 144 | Hypothetical protein | CDS | 147,274 | 147,519 | 246 | Reverse |
| 145 | Single-stranded DNA-binding protein | CDS | 147,725 | 148,186 | 462 | Reverse |
| 146 | Phage regulatory protein | CDS | 148,198 | 149,031 | 834 | Reverse |
| 147 | DUF3158 family protein | CDS | 149,037 | 149,600 | 564 | Reverse |
| 148 | TIGR03761 family integrating conjugative elementprotein | CDS | 149,597 | 150,376 | 780 | Reverse |
| 149 | Hypothetical protein | CDS | 150,369 | 150,918 | 550 | Reverse |
| 150 | Hypothetical protein | CDS | 151,362 | 152,723 | 1,362 | Reverse |
| 151 | DUF2857 family protein | CDS | 152,720 | 153,457 | 738 | Reverse |
| 152 | parBchromosome partitioning protein | CDS | 153,494 | 155,254 | 1,761 | Reverse |
| 153 | Arc family DNA-binding protein | CDS | 155,257 | 155,574 | 318 | Reverse |
| 154 | Hypothetical protein | CDS | 155,510 | 155,755 | 246 | Reverse |
| 155 | Hypothetical protein | CDS | 155,752 | 156,156 | 405 | Reverse |
| 156 | Hypothetical protein | CDS | 156,158 | 156,487 | 330 | Reverse |
| 157 | Hypothetical protein | CDS | 156,797 | 157,387 | 591 | Reverse |
| 158 | dnaB | CDS | 15,7384 | 158,730 | 1,347 | Reverse |
| 159 | AAA family ATPase | CDS | 158,788 | 159,648 | 861 | Reverse |
| tRNA-Pro | tRNA | 159,887 | 159,963 | 77 | Forward |