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Comparison of output from GCAE to the corresponding true genotypes for the 1000 Genomes chromosome 22 data set. Left: Site frequency spectrum of true genotypes vs output genotypes, with color indicating number of sites in 100 allele frequency bins. Right: Decay of LD with distance along the chromosome for a subset of samples and SNPs, displaying the mean value of R2 for pairs of sites in 25 distance bins.
