Table 1.
FALCON-Unzip | HiRise | Final | |
---|---|---|---|
Number of contigs (scaffolds) | 654 | 514 | 488 |
Total size of contigs (scaffolds) | 1,048,552,296 | 1,046,143,939 | 1,044,982,141 |
Longest contig (scaffold) | 25,936,340 | 130,552,502 | 130,552,502 |
Number of contigs (scaffold) >1M nt | 141 | 18 | 18 |
Number of contigs (scaffold) >10M nt | 28 | 18 | 18 |
N50 contig (scaffold) length | 9,175,439 | 50,595,616 | 50,595,616 |
L50 contig (scaffold) count | 33 | 7 | 7 |
GC content (%) | 34.27 | 34.27 | 34.27 |
FALCON-Unzip: Assembly result using PacBio data.
HiRise: Scaffolding result using FALCON-Unzip data.
Final: Organelle (plastid) genome removed from HiRise result.