Table 1.
Gene ontologies of differentially regulated transcripts in tVI-GTs of the tomato af mutant
| GO ID | GO description of genes downregulated in af mutanta | FDR | P-value |
|---|---|---|---|
| 0055114 | Oxidation–reduction process | 1.14E-11 | 2.77E-15 |
| 0044711 | Single-organism biosynthetic process | 4.87E-10 | 6.70E-13 |
| 1901565 | Organonitrogen compound catabolic process | 4.87E-10 | 7.05E-13 |
| 0006629 | Lipid metabolic process | 1.47E-09 | 2.48E-12 |
| 0008299 | Isoprenoid biosynthetic process | 1.64E-09 | 2.96E-12 |
| 0015979 | Photosynthesis | 1.99E-08 | 4.79E-11 |
| 1901606 | Amino acid catabolic process | 6.82E-07 | 1.97E-09 |
| 0016114 | Terpenoid biosynthetic process | 1.80E-06 | 6.30E-09 |
| 0042440 | Pigment metabolic process | 2.65E-06 | 9.91E-09 |
|
| |||
| GO ID | GO description of genes upregulated in af mutanta | FDR | P-value |
|
| |||
| 0006310 | DNA recombination | 3.97E-03 | 2.37E-06 |
| 0009408 | Response to heat | 4.08E-03 | 3.59E-06 |
| 0006298 | Mismatch repair | 4.91E-03 | 5.33E-06 |
| 0051716 | Cellular response to stimulus | 8.00E-03 | 1.54E-05 |
| 0009314 | Response to radiation | 1.04E-02 | 2.22E-05 |
| 0007165 | Signal transduction | 1.19E-02 | 2.88E-05 |
| 0009628 | Response to abiotic stimulus | 1.38E-02 | 3.48E-05 |
| 1901700 | Response to oxygen-containing compound | 1.71E-02 | 5.19E-05 |
a
Differential gene expression was determined by an RNA-seq experiment in which transcript abundance in isolated tVI trichomes from the CHI1-deficienct af mutant was compared to transcript levels in two CHI1-complemented control lines.