Table 8.
Differentially abundant taxa at Family level in live bacteria between LM and MAM.
| Family | Relative abundance (%) | Padj | log2FC |
|---|---|---|---|
| Enterobacteriaceae | 13.9 | 1.9e−08 | 4.8 |
| Lachnospiraceae | 11.7 | 0.0024 | − 1.3 |
| Bifidobacteriaceae | 11.6 | 0.047 | − 1.3 |
| Veillonellaceae | 3.0 | 0.012 | 1.2 |
| Coriobacteriaceae | 2.4 | 0.0057 | − 1.2 |
The live bacteria samples excluding stool samples (n = 54; ten subjects over three sites in the LM and eight subjects over three sites in the MAM) were used in DESeq2 analysis with full model of ~ subject + gut_sites + MAM and reduced model of ~ subject + gut_sites, where "MAM" means MAM or LM.
Criteria for inclusion: Relative abundance > 1% and padj < 0.01.
Relative abundance: mean on relative abundance of normalized counts for subset samples.
Padj: the Benjamini–Hochberg adjusted P value; log2FC: log2(MAM/LM).
MAM mucosa‒associated microbiota, LM luminal microbiota.