Table 2.
Subtyping of C. felis isolates using reference positions based on gp60 gene
| Sample | R1 (463–556) |
Deletion (667–679) |
Indel (706–711) |
R2 (770–910) |
Indel (1015–1068) |
Indel (1156–1167) |
Subtype family |
|---|---|---|---|---|---|---|---|
| C. felis cat isolate 1 | 1 copy | 9 bp | - | 2 copy | - | 4 GGT | XIXa |
| C. felis cat isolate 2 | 1 copy | 9 bp | - | 1 copy | - | a | XIXa |
| C. felis cat isolate 3 | 1 copy | 9 bp | - | 2 copy | - | a | XIXa |
| C. felis cat isolate 4 | 1 copy | 9 bp | - | 2 copy | - | a | XIXa |
| C. felis cat isolate 5 | 1 copy | 9 bp | - | 2 copy | - | 3 GGT | XIXa |
| C. felis cat isolate 6 | 1 copy | 9 bp | - | 1 copy | - | 4 GGT | XIXa |
| C. felis cat isolate 7 | 1 copy | 9 bp | - | 1 copy | - | 4 GGT | XIXa |
| C. felis cat isolate 8 | 1 copy | 9 bp | - | 1 copy | - | 2 GGT | XIXa |
| C. felis cat isolate 9 | 1 copy | 9 bp | - | 2 copy | - | 3 GGT | XIXa |
| C. felis cat isolate 10 | 1 copy | 9 bp | - | 2 copy | - | 2 GGT | XIXa |
| C. felis cat isolate 11 | 1 copy | 9 bp | - | 2 copy | - | 4 GGT | XIXa |
| C. felis cat isolate 12 | 1 copy | 9 bp | - | 1 copy | - | 4 GGT | XIXa |
| Reference isolate 1 | 1–3 copies | 3 or 9 bp | - | 1–4 copies | - | 2–5 GGT | XIXa |
| Reference isolate 2 | 1 or 2 copies | 6 or 15 bp | - | 2–4 copies | 18 bp | 4 GGT | XIXb |
| Reference isolate 3 | 2 copies | 15 bp | - | 3 copies | - | 3 GGT | XIXc |
| Reference isolate 4 | 1 copy | - | - | 1 copy | - | 4 GGT | XIXd |
| Reference isolate 5 | 1 copy | - | 6 bp | 1 copy | 36 bp | 4 GGT | XIXe |
Reference positions are from Jiang et al. 2020 [26]
ashows the unevaluated sequences because of sequencing errors
R1: 33-bp tandem repeat (CCACCTAGTGGCGGTAGTGGCGTGTCCCCTGCT)
R2: 39-bp tandem repeat (AGCACAACTACGGCTACAGCGAGCACTGCGAGTTCGACA)