| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Biological samples | ||
| Maternal (milk and fecal) and infant (fecal) samples used for microbiome analysis | Author's collection (Wake Forest School of Medicine Vervet Research Colony) | https://doi.org/10.6084/m9.figshare.14561925 |
| Deposited data | ||
| 16S rRNA amplicon sequences from 118 fecal and milk samples | This paper | www.ncbi.nlm.nih.gov/sra/PRJNA728247 (NCBI Sequence Read Archive) |
| Experimental models: Organisms/strains | ||
| 18 adult female and 18 mixed-sex infant vervet monkeys (Chlorocebus aethiops sabaeus) | Vervet Research Colony, Wake Forest University | N/A |
| Software and algorithms | ||
| QIIME2 | Hall and Beiko, 2018 | https://qiime2.org/ |
| DADA2 | Callahan et al., 2016 | https://benjjneb.github.io/dada2/ |
| MAFFT | Katoh et al., 2002 | https://mafft.cbrc.jp/alignment/software/ |
| PICRUSt2 | Douglas et al., 2020 | https://nephele.niaid.nih.gov/show_picrust2_details/ |
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