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. 2022 Mar 3;82(5):933–949.e9. doi: 10.1016/j.molcel.2022.01.008
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Alpaca anti-GFP VHH sdAb AF647 (anti-GFP nanobody-AF647) 1:2000 dilution Chromotec (home labeled) Cat#gt-250
Rabbit polyclonal anti-BAX
1:1000 dilution
Cell Signaling Technology Cat#2772; RRID: AB_10695870
Rabbit monoclonal anti-BAX (D2E11)
1:1000 dilution
Cell Signaling Technology Cat#5023; RRID: AB_10557411
Mouse monoclonal anti-GFP
1:1000 dilution
ThermoFischer Cat#MA5-15256;
RRID: AB_10979281
Rabbit polyclonal anti-GAPDH
1:2500 dilution
abcam Cat#ab9485; RRID: AB_307275
Goat polyclonal anti-Rabbit IgG-HRP
1:10000 dilution
Jackson Immuno Research Cat#111-035-003; RRID: AB_2313567
Goat polyclonal anti-Mouse IgG-HRP
1:10000 dilution
Jackson Immuno Research Cat# 115-035-003; RRID: AB_10015289
Camelid sdAb anti-GFP; Clones 1H1(FluoTag-Q anti-GFP Alexa Fluor 647)1:2000 dilution NanoTag Biotechnologies Cat#N0301
Goat polyclonal anti-Rabbit (AF633)
1:200 dilution
ThermoFisher Cat#A-21070; RRID: AB_2535731
Rabbit monoclonal anti-Tom20 (D8T4N)1:100 dilution Cell Signaling Technology Cat#42406; RRID: AB_2687663
Mouse anti-Cytc
1:1000 dilution
BD Biosciences Cat#556433; RRID: AB_396417
Mouse monoclonal anti-GAPDH (D4C6R)1:1000 dilution Cell Signaling Technology Cat#97166; RRID: AB_2756824
Rabbit anti-IMMT
1:1000 dilution
Proteintech 10179-AP; RRID: AB_2127193
Rabbit polyclonal anti-PARP
1:1000 dilution
Cell Signaling Technology Cat#9542; RRID: AB_2160739
Rabbit monoclonal anti-pTBK1/NAK (Ser172) (D52C2)1:1000 dilution Cell Signaling Technology Cat#5483; RRID: AB_10693472
Rabbit monoclonal anti-TBK1/NAK (D1B4)
1:1000 dilution
Cell Signaling Technology Cat#3504; RRID: AB_2255663
Rabbit monoclonal anti-STING (D2P2F)
1:1000 dilution
Cell Signaling Technology Cat#13647; RRID: AB_2732796
PerCP/Cyanine5.5 Rat anti-mouse Ly-6C
1:200 dilution
Biolegend Cat#128011;
RRID: AB_1659242
Alexa Fluor 488 Rat anti-mouse/human CD44
1:800 dilution
Biolegend Cat#103016;
RRID: AB_493679
Alexa Fluor 647 Mouse anti-mouse NK-1.1
1:200 dilution
Biolegend Cat#108719;
RRID: AB_493186
Alexa Fluor 700 Rat anti-mouse CD4
1:100 dilution
Biolegend Cat#100536;
RRID: AB_493701
Super Bright 702 Rat monoclonal anti-CD45 (30-F11)1:200 dilution ThermoFischer Cat#67-0451-82;
RRID: AB_2662424
Brilliant Violet 785 Rat anti-mouse CD62L
1:800 dilution
Biolegend Cat#104440;
RRID: AB_2629685
Brilliant Violet 650 Armenian Hamster anti-mouse CD80
1:400 dilution
Biolegend Cat#104732;
RRID: AB_2686972
Brilliant Violet 421 Rat anti-mouse/human CD11b
1:400 dilution
Biolegend Cat#101251;
RRID: AB_2562904
Brilliant Violet 510 Rat anti-mouse CD8a
1:200 dilution
Biolegend Cat#100752;
RRID: AB_2563057
Super Bright 600 Rat monoclonal anti-CD45R (B220) (RA3-6B2)
1:200 dilution
ThermoFischer Cat#63-0452-82;
RRID: AB_2637457
PE-Cy7 Hamster anti-mouse CD11c
1:400 dilution
BD Biosciences Cat#561022;
RRID: AB_647251
PE Rat anti-mouse Ly-6G
1:800 dilution
Biolegend Cat#127607;
RRID: AB_1186104
PE/Dazzle 594 Rat anti-mouse I-A/I-E
1:800 dilution
Biolegend Cat#107647;
RRID: AB_2565978
Rat anti-mouse CD16/CD32
1:50 dilution
BD Biosciences Cat#553142;
RRID: AB_394656

Bacterial and virus strains

BL21 (DE3) RIPL Stratagene (available via Agilent) Cat#230280

Chemicals, peptides, and recombinant proteins

Egg PC OttoNordwald (Avanti) Cat#840051C
Cardiolipin Sigma Cat#C0563
DiI stain ThermoFischer Cat#D3911
S63845 Hölzel Cat#HY-100741
ABT-737 Hölzel Cat#HY-50907
Q-VD-OPh Hölzel Cat#HY-12305g
Staurosporine LC laboratories (USA) Cat#S3900
GLUCOSE OXIDASE TYPE VII Sigma Cat#G2133-10KU
Cysteamine-Hydrochlorid (MEA) Sigma Cat#95294-1L
Catalase Merck Cat#219261-100KU
SNAP-cell 647SiR NEB Cat#S9102S
Janelia Fluor® 549 HaloTag® Ligand Promega Cat#GA1110
Live Cell Imaging Solution ThermoFischer Cat#A14291DJ
Pierce™ Streptavidin Magnetic Beads ThermoFischer Cat#88817
GFP Trap agarose beads Chromotek Cat#X336.1
XIRAN® (SMA2:1) Polyscope Cat#SZ30010

Critical commercial assays

Live/Dead fixable Near-IR Cell Stain Kit ThermoFischer Cat#L10119

Deposited data

Raw western blot and microscopy data Mendeley doi: 10.17632/2gwcgpvwx5.1

Experimental models: Cell lines

Human bone osteosarcoma cells: U2OS Gift from S. Tait, Glasgow https://doi.org/10.15252/embj.201899238
Human bone osteosarcoma cells: U2OS BAX -/- (U2OS BAX KO) Gift from S. Tait, Glasgow https://doi.org/10.15252/embj.201899238
Human bone osteosarcoma cells: U2OS BAK -/-(U2OS BAK KO) Gift from S. Tait, Glasgow https://doi.org/10.15252/embj.201899238
Human bone osteosarcoma cells: U2OS BAX -/-/BAK -/-(U2OS BAX/BAK DKO) Gift from S. Tait, Glasgow https://doi.org/10.15252/embj.201899238
Human bone osteosarcoma cells: U2OS NUP96-mEGFP Available from CLS cell lines service GmbH Cat#300174
Murine endothelial cells: SVEC 4–10 Gift from S. Tait, Glasgow https://doi.org/10.15252/embj.201899238
Murine endothelial cells: SVEC 4–10 BAX -/-(SVEC BAX KO) Gift from S. Tait, Glasgow https://doi.org/10.15252/embj.201899238
Murine endothelial cells: SVEC 4–10 BAK -/-(SVEC BAK KO) Gift from S. Tait, Glasgow https://doi.org/10.15252/embj.201899238
Human colon cancer cells: HCT116 BAX -/-/BAK -/-(HCT116 BAX/BAK DKO) Gift from K. Schulze-Osthoff, Tübingen N/A
Spleenocytes extracted from female mice (C57BL/6N) Available from The Jackson Laboratory Cat#005304

Recombinant DNA

pcDNA3_Smac1-60_mCherry Gift from S. Tait, Glasgow https://doi.org/10.15252/embj.201899238
mTagBFP2-TOMM20-N-10 Addgene Cat#55328
pEGFP-A206K_BAX_C1 (mEGFP-BAX) This manuscript N/A
pEGFP-A206K_BAX(S184V) C1 (mEGFP-BAX(S184V)) This manuscript N/A
pEGFP-A206K_BAX(T182I) C1 (mEGFP-BAX(T182I)) This manuscript N/A
pEGFP_A206K_BAK_C1 (mEGFP-BAK) This manuscript N/A
pTYB21_mBAK-L192K, F193S, Y196D, C154S This manuscript N/A
pTYB1_hBAX-S4C,C62S, C126S Previous study https://doi.org/10.1038/ncomms9042
pTYB1 Bid WT Previous study https://doi.org/10.1038/ncomms9042
pEGFP-Tfam-GFP This manuscript N/A
pCRY2(1-531)-mCherry-BAK Addgene Cat#117238
pcDNA-CIBN-mCherry-BAK This manuscript N/A
pEGFP-N1-4xmt-mTurquoise2 Addgene Cat#98819
pAcGFP-C1-SnapF-BAX This manuscript N/A
pAcGFP-C1-Halo7-BAK This manuscript N/A
pEGFP-Flag-APEX2-BAX This manuscript N/A
pEGFP-Flag-APEX2-BAK This manuscript N/A
pAcGFP-C1-RA-BAX This manuscript N/A
pAcGFP-C1-GB-BAK This manuscript N/A

Software and algorithms

Stoichiometry Analysis Software (SAS) https://doi.org/10.1021/acs.jpclett.1c03835 https://github.com/jdanial/SAS
GUVdetector software https://doi.org/10.1093/bioinformatics/btu102 http://garcia-saez.cecad-labs.uni-koeln.de/GUV-software.864.0.html
ImageJ/FIJI doi: 10.1038/nmeth.2019 https://imagej.net/software/fiji/
ThunderStorm DOI: 10.1093/bioinformatics/btu202 https://code.google.com/p/thunder-storm/
Huygens Professional Scientific Volume Imaging, Netherlands http://svi.nl
Radial Profile Plot Plugin (ImageJ) https://imagej.nih.gov/ij/plugins/radial-profile.html N/A
GraphPad Prism 5.0 GraphPad https://www.graphpad.com/scientific-software/prism/
Origin OriginLab Corporation https://www.originlab.com/
Python https://www.python.org/ N/A