REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Alpaca anti-GFP VHH sdAb AF647 (anti-GFP nanobody-AF647) 1:2000 dilution | Chromotec (home labeled) | Cat#gt-250 |
Rabbit polyclonal anti-BAX 1:1000 dilution |
Cell Signaling Technology | Cat#2772; RRID: AB_10695870 |
Rabbit monoclonal anti-BAX (D2E11) 1:1000 dilution |
Cell Signaling Technology | Cat#5023; RRID: AB_10557411 |
Mouse monoclonal anti-GFP 1:1000 dilution |
ThermoFischer | Cat#MA5-15256; RRID: AB_10979281 |
Rabbit polyclonal anti-GAPDH 1:2500 dilution |
abcam | Cat#ab9485; RRID: AB_307275 |
Goat polyclonal anti-Rabbit IgG-HRP 1:10000 dilution |
Jackson Immuno Research | Cat#111-035-003; RRID: AB_2313567 |
Goat polyclonal anti-Mouse IgG-HRP 1:10000 dilution |
Jackson Immuno Research | Cat# 115-035-003; RRID: AB_10015289 |
Camelid sdAb anti-GFP; Clones 1H1(FluoTag-Q anti-GFP Alexa Fluor 647)1:2000 dilution | NanoTag Biotechnologies | Cat#N0301 |
Goat polyclonal anti-Rabbit (AF633) 1:200 dilution |
ThermoFisher | Cat#A-21070; RRID: AB_2535731 |
Rabbit monoclonal anti-Tom20 (D8T4N)1:100 dilution | Cell Signaling Technology | Cat#42406; RRID: AB_2687663 |
Mouse anti-Cytc 1:1000 dilution |
BD Biosciences | Cat#556433; RRID: AB_396417 |
Mouse monoclonal anti-GAPDH (D4C6R)1:1000 dilution | Cell Signaling Technology | Cat#97166; RRID: AB_2756824 |
Rabbit anti-IMMT 1:1000 dilution |
Proteintech | 10179-AP; RRID: AB_2127193 |
Rabbit polyclonal anti-PARP 1:1000 dilution |
Cell Signaling Technology | Cat#9542; RRID: AB_2160739 |
Rabbit monoclonal anti-pTBK1/NAK (Ser172) (D52C2)1:1000 dilution | Cell Signaling Technology | Cat#5483; RRID: AB_10693472 |
Rabbit monoclonal anti-TBK1/NAK (D1B4) 1:1000 dilution |
Cell Signaling Technology | Cat#3504; RRID: AB_2255663 |
Rabbit monoclonal anti-STING (D2P2F) 1:1000 dilution |
Cell Signaling Technology | Cat#13647; RRID: AB_2732796 |
PerCP/Cyanine5.5 Rat anti-mouse Ly-6C 1:200 dilution |
Biolegend | Cat#128011; RRID: AB_1659242 |
Alexa Fluor 488 Rat anti-mouse/human CD44 1:800 dilution |
Biolegend | Cat#103016; RRID: AB_493679 |
Alexa Fluor 647 Mouse anti-mouse NK-1.1 1:200 dilution |
Biolegend | Cat#108719; RRID: AB_493186 |
Alexa Fluor 700 Rat anti-mouse CD4 1:100 dilution |
Biolegend | Cat#100536; RRID: AB_493701 |
Super Bright 702 Rat monoclonal anti-CD45 (30-F11)1:200 dilution | ThermoFischer | Cat#67-0451-82; RRID: AB_2662424 |
Brilliant Violet 785 Rat anti-mouse CD62L 1:800 dilution |
Biolegend | Cat#104440; RRID: AB_2629685 |
Brilliant Violet 650 Armenian Hamster anti-mouse CD80 1:400 dilution |
Biolegend | Cat#104732; RRID: AB_2686972 |
Brilliant Violet 421 Rat anti-mouse/human CD11b 1:400 dilution |
Biolegend | Cat#101251; RRID: AB_2562904 |
Brilliant Violet 510 Rat anti-mouse CD8a 1:200 dilution |
Biolegend | Cat#100752; RRID: AB_2563057 |
Super Bright 600 Rat monoclonal anti-CD45R (B220) (RA3-6B2) 1:200 dilution |
ThermoFischer | Cat#63-0452-82; RRID: AB_2637457 |
PE-Cy7 Hamster anti-mouse CD11c 1:400 dilution |
BD Biosciences | Cat#561022; RRID: AB_647251 |
PE Rat anti-mouse Ly-6G 1:800 dilution |
Biolegend | Cat#127607; RRID: AB_1186104 |
PE/Dazzle 594 Rat anti-mouse I-A/I-E 1:800 dilution |
Biolegend | Cat#107647; RRID: AB_2565978 |
Rat anti-mouse CD16/CD32 1:50 dilution |
BD Biosciences | Cat#553142; RRID: AB_394656 |
Bacterial and virus strains | ||
BL21 (DE3) RIPL | Stratagene (available via Agilent) | Cat#230280 |
Chemicals, peptides, and recombinant proteins | ||
Egg PC | OttoNordwald (Avanti) | Cat#840051C |
Cardiolipin | Sigma | Cat#C0563 |
DiI stain | ThermoFischer | Cat#D3911 |
S63845 | Hölzel | Cat#HY-100741 |
ABT-737 | Hölzel | Cat#HY-50907 |
Q-VD-OPh | Hölzel | Cat#HY-12305g |
Staurosporine | LC laboratories (USA) | Cat#S3900 |
GLUCOSE OXIDASE TYPE VII | Sigma | Cat#G2133-10KU |
Cysteamine-Hydrochlorid (MEA) | Sigma | Cat#95294-1L |
Catalase | Merck | Cat#219261-100KU |
SNAP-cell 647SiR | NEB | Cat#S9102S |
Janelia Fluor® 549 HaloTag® Ligand | Promega | Cat#GA1110 |
Live Cell Imaging Solution | ThermoFischer | Cat#A14291DJ |
Pierce™ Streptavidin Magnetic Beads | ThermoFischer | Cat#88817 |
GFP Trap agarose beads | Chromotek | Cat#X336.1 |
XIRAN® (SMA2:1) | Polyscope | Cat#SZ30010 |
Critical commercial assays | ||
Live/Dead fixable Near-IR Cell Stain Kit | ThermoFischer | Cat#L10119 |
Deposited data | ||
Raw western blot and microscopy data | Mendeley | doi: 10.17632/2gwcgpvwx5.1 |
Experimental models: Cell lines | ||
Human bone osteosarcoma cells: U2OS | Gift from S. Tait, Glasgow | https://doi.org/10.15252/embj.201899238 |
Human bone osteosarcoma cells: U2OS BAX -/- (U2OS BAX KO) | Gift from S. Tait, Glasgow | https://doi.org/10.15252/embj.201899238 |
Human bone osteosarcoma cells: U2OS BAK -/-(U2OS BAK KO) | Gift from S. Tait, Glasgow | https://doi.org/10.15252/embj.201899238 |
Human bone osteosarcoma cells: U2OS BAX -/-/BAK -/-(U2OS BAX/BAK DKO) | Gift from S. Tait, Glasgow | https://doi.org/10.15252/embj.201899238 |
Human bone osteosarcoma cells: U2OS NUP96-mEGFP | Available from CLS cell lines service GmbH | Cat#300174 |
Murine endothelial cells: SVEC 4–10 | Gift from S. Tait, Glasgow | https://doi.org/10.15252/embj.201899238 |
Murine endothelial cells: SVEC 4–10 BAX -/-(SVEC BAX KO) | Gift from S. Tait, Glasgow | https://doi.org/10.15252/embj.201899238 |
Murine endothelial cells: SVEC 4–10 BAK -/-(SVEC BAK KO) | Gift from S. Tait, Glasgow | https://doi.org/10.15252/embj.201899238 |
Human colon cancer cells: HCT116 BAX -/-/BAK -/-(HCT116 BAX/BAK DKO) | Gift from K. Schulze-Osthoff, Tübingen | N/A |
Spleenocytes extracted from female mice (C57BL/6N) | Available from The Jackson Laboratory | Cat#005304 |
Recombinant DNA | ||
pcDNA3_Smac1-60_mCherry | Gift from S. Tait, Glasgow | https://doi.org/10.15252/embj.201899238 |
mTagBFP2-TOMM20-N-10 | Addgene | Cat#55328 |
pEGFP-A206K_BAX_C1 (mEGFP-BAX) | This manuscript | N/A |
pEGFP-A206K_BAX(S184V) C1 (mEGFP-BAX(S184V)) | This manuscript | N/A |
pEGFP-A206K_BAX(T182I) C1 (mEGFP-BAX(T182I)) | This manuscript | N/A |
pEGFP_A206K_BAK_C1 (mEGFP-BAK) | This manuscript | N/A |
pTYB21_mBAK-L192K, F193S, Y196D, C154S | This manuscript | N/A |
pTYB1_hBAX-S4C,C62S, C126S | Previous study | https://doi.org/10.1038/ncomms9042 |
pTYB1 Bid WT | Previous study | https://doi.org/10.1038/ncomms9042 |
pEGFP-Tfam-GFP | This manuscript | N/A |
pCRY2(1-531)-mCherry-BAK | Addgene | Cat#117238 |
pcDNA-CIBN-mCherry-BAK | This manuscript | N/A |
pEGFP-N1-4xmt-mTurquoise2 | Addgene | Cat#98819 |
pAcGFP-C1-SnapF-BAX | This manuscript | N/A |
pAcGFP-C1-Halo7-BAK | This manuscript | N/A |
pEGFP-Flag-APEX2-BAX | This manuscript | N/A |
pEGFP-Flag-APEX2-BAK | This manuscript | N/A |
pAcGFP-C1-RA-BAX | This manuscript | N/A |
pAcGFP-C1-GB-BAK | This manuscript | N/A |
Software and algorithms | ||
Stoichiometry Analysis Software (SAS) | https://doi.org/10.1021/acs.jpclett.1c03835 | https://github.com/jdanial/SAS |
GUVdetector software | https://doi.org/10.1093/bioinformatics/btu102 | http://garcia-saez.cecad-labs.uni-koeln.de/GUV-software.864.0.html |
ImageJ/FIJI | doi: 10.1038/nmeth.2019 | https://imagej.net/software/fiji/ |
ThunderStorm | DOI: 10.1093/bioinformatics/btu202 | https://code.google.com/p/thunder-storm/ |
Huygens Professional | Scientific Volume Imaging, Netherlands | http://svi.nl |
Radial Profile Plot Plugin (ImageJ) | https://imagej.nih.gov/ij/plugins/radial-profile.html | N/A |
GraphPad Prism 5.0 | GraphPad | https://www.graphpad.com/scientific-software/prism/ |
Origin | OriginLab Corporation | https://www.originlab.com/ |
Python | https://www.python.org/ | N/A |