TABLE 2.
F3 Gene set name | NES | NOM p-value | FDR q-value |
HALLMARK_TNFA_SIGNALING_VIA_NFKB | 2.1254597 | 0.0020920502 | 0.012768714 |
HALLMARK_PROTEIN_SECRETION | 1.8423452 | 0.011538462 | 0.108587116 |
HALLMARK_TGF_BETA_SIGNALING | 1.8364073 | 0.004201681 | 0.07587484 |
HALLMARK_ANDROGEN_RESPONSE | 1.8044238 | 0.003992016 | 0.07571529 |
HALLMARK_INFLAMMATORY_RESPONSE | 1.7778409 | 0.025210084 | 0.07510248 |
HALLMARK_ANGIOGENESIS | 1.7481711 | 0.03218884 | 0.0744541 |
HALLMARK_UV_RESPONSE_DN | 1.7308366 | 0.023809524 | 0.07183651 |
HALLMARK_HYPOXIA | 1.7283051 | 0.006147541 | 0.063461505 |
HALLMARK_KRAS_SIGNALING_UP | 1.5838146 | 0.04140787 | 0.14405042 |
HALLMARK_ESTROGEN_RESPONSE_EARLY | 1.5765619 | 0.01192843 | 0.13539882 |
HALLMARK_COAGULATION | 1.5047035 | 0.07083333 | 0.18064147 |
HALLMARK_P53_PATHWAY | 1.4900132 | 0.064327486 | 0.17695041 |
HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION | 1.4614903 | 0.14529915 | 0.1858001 |
HALLMARK_IL2_STAT5_SIGNALING | 1.3936588 | 0.0931677 | 0.23351207 |
HALLMARK_COMPLEMENT | 1.3718619 | 0.1211499 | 0.23838237 |
HALLMARK_APOPTOSIS | 1.3674948 | 0.09543569 | 0.22706622 |
HALLMARK_APICAL_JUNCTION | 1.339846 | 0.124740124 | 0.23955816 |
HALLMARK_ESTROGEN_RESPONSE_LATE | 1.3308438 | 0.08139535 | 0.23490565 |
HALLMARK_NOTCH_SIGNALING | 1.303096 | 0.12 | 0.24633111 |
HALLMARK_CHOLESTEROL_HOMEOSTASIS | 1.2884008 | 0.19881889 | 0.24660629 |
HALLMARK_IL6_JAK_STAT3_SIGNALING | 1.2409605 | 0.24032587 | 0.27643096 |
HALLMARK_HEME_METABOLISM | 1.16959 | 0.21 | 0.3391025 |
HALLMARK_APICAL_SURFACE | 1.0963137 | 0.32291666 | 0.41219345 |
HALLMARK_XENOBIOTIC_METABOLISM | 0.9730441 | 0.48765433 | 0.5603313 |
HALLMARK_BILE_ACID_METABOLISM | 0.97177833 | 0.47843942 | 0.53951836 |
HALLMARK_GLYCOLYSIS | 0.95500576 | 0.5 | 0.5430764 |
HALLMARK_MITOTIC_SPINDLE | 0.89950985 | 0.5173745 | 0.60172385 |
HALLMARK_HEDGEHOG_SIGNALING | 0.798115 | 0.7014028 | 0.7355321 |
HALLMARK_KRAS_SIGNALING_DN | 0.61187136 | 0.9920477 | 0.9415714 |
HALLMARK_INTERFERON_GAMMA_RESPONSE | 0.5211765 | 0.8945233 | 0.9624734 |