Table 3.
Differentially abundant genera in obesity/metabolic diseases
| No. of studies | 3 or more papers with obesity-associated | 2 papers with obesity-associated | 1 paper with obesity-associated | 0 paper with obesity-associated |
|---|---|---|---|---|
| 3 or more papers with lean-associated | Faecalibacterium (13,3) [18–20, 22, 26, 44, 46, 58, 59, 66, 69, 71, 72] | Bifidobacterium (6) [20–22, 57, 58, 68] | Alistipes (10) [20, 26, 44, 53, 58–60, 68, 76, 77] | Odoribacter (6) [29, 44, 59, 60, 77, 78] |
| Prevotella (5,6) [26, 38, 67, 72, 73, 75] | Roseburia (4) [53, 63, 66, 68, 69, 79] | Akkermansia (9) [23, 28, 36, 44, 45, 47, 49, 65, 70] | Oscillospira (6) [20, 36, 68, 70, 75, 77] | |
| Bacteroides (6,4) [18, 24, 26, 41, 43, 44, 46, 48, 69, 72] | Clostridium (4) [20, 38, 46, 49, 53, 72] | Turicibacter (3) | Oscillibacter (4) | |
| Ruminococcus (4, 5) [20, 23, 39, 44, 49, 62, 63, 68, 69] | Eubacterium (3) [20, 44, 68] | |||
| Dialister (4,4) [19, 20, 36, 50, 55, 70, 72, 79] | Desulfovibrio (3) [18, 20, 44] | |||
| Lactobacillus (3,6) [19, 21, 38, 46, 57, 60] | Anaerotruncus (3) | |||
| Coprococcus (3, 5) [18, 23, 44, 48, 63, 68, 69, 71] | ||||
| Blautia (3,6) [38, 39, 44, 48, 73, 74] | ||||
| 2 papers with lean-associated | Streptococcus (4) | Bilophila | Holdemania | Oxalobacter |
| Lachnospira (3) | Methanobrevibacter | |||
| Fusobacterium (4) [18, 20, 22, 44] | Acholeplasma | |||
| gemmiger | ||||
| 1 paper with lean-associated | Sutterella | Veillonella | ||
| Phascolarctobacterium (3) | Megasphaera | Staphylococcus | Haemophilus | |
| Dorea (4) | Megamonas | Rothia | Anaerostipes | |
| Collinsella (3) | Adlercreutzia | Pseudomonas | Parabacteroides | |
| Acidaminococcus (3) | Parasutterella | |||
| Lactococcus | ||||
| Klebsiella | ||||
| Haemophilus | ||||
| 0 paper with lean-associated | Succinivibrio (3) [38, 69, 78] | SMB53 | Alloprevotella | |
| Escherichia (3) [57, 60, 68] | Porphyromonas | Lachnospiraceae incertae sedis | ||
| Peptoniphilus | Burkholderiales | |||
| Mitsuokella | ||||
| Escherichia-Shiguela | ||||
| Catenibacterium | ||||
| Bacillus | ||||
| Aggregatibacter | ||||
*n (lean-associated, obesity-associated)
For most studies used 16s rRNA sequencing, which lacks species resolution, Faecalibacterium prausnitzii, and Akkermansia muciniphila were combined with respective genera as they were the primary species that constitute respective genera