Fig. 1.

The software operation process. Module 1: Phenotype characterization and correlation; Module 2: Data quality evaluation; Module 3: Knowledge database annotation for all identifications; Module 4: Feature (gene, protein, PTM) selection using differential expression analysis, dimensionality reduction, and clustering; Module 5: Correlation and regression model analysis for phenotype associated with the individual feature; Module 6: Enrichment analysis for phenotype association with feature sets