FIG 2.

(A) Taxon plot of flocks, grouped by provenance. Order-level assignments above a 2% total relative abundance are shown individually. (B to D) Relative abundances of groups of ASVs (B and C) or an individual ASV (D) from the 16S sequencing data set. Samples are grouped according to flock and colored by provenance. Red, hobby farm (HF); blue, factory farm (FF); green, wild bird (W). (B and C) Sum of reads from multiple ASVs that were each assigned to the Staphylococcus or Campylobacter genus. (D) Reads from a single ASV that could not be assigned below the Enterobacteriaceae family.