Table 1.
Basic statistics for three assemblies of the mite Fragariocoptes setiger and its microbiome.
| Metagenome* | Metatranscriptome* | Mite genome | |
|---|---|---|---|
| Contigs number (N) | 70,345 | 31,089 | 3581 |
| Total contig size (bp) | 139,253,250 | 39,862,892 | 40,873,958 |
| Longest contig (bp) | 423,970 | 18,766 | 182,071 |
| Mean contig length (bp) | 1979.58 | 1282.22 | 11,414.12 |
| Median contig length (bp) | 757 | 826 | 3603 |
| Standard deviation of contig length (bp) | 7685.98 | 1167.73 | 18,445.63 |
| Contig L50 (N) | 2683 | 6522 | 370 |
| Contig N50 (bp) | 6218 | 1643 | 31,600 |
| Contig L75 (N) | 19,995 | 15,263 | 834 |
| Contig N75 (bp) | 1102 | 839 | 15,183 |
| Contig L90 (N) | 45,528 | 23,782 | 1445 |
| Contig N90 (bp) | 641 | 599 | 6110 |
| Average coverage | 265.81 | 192.21 | 4568.12 |
| Median coverage | 6.44 | 10.57 | 2480.21 |
| Standard deviation of coverage | 3185.71 | 4161.95 | 6778.21 |
| Total GC content (%) | 54.43% | 47.38% | 43.18% |
| Average contig GC content (%) | 57.27% | 47.66% | 43.58% |
*For contigs ≥ 500 bp only.