TABLE 4.

Quantitative trait nucleotides (QTNs) associated with resistance to Pst races at seedling stage in SYN-DER panel using 90K and GBS markers.

Race	SNP	Allelesa	Chr	Pos	QTN effectb	LOD score	−log10(p)	r2 (%)c	MAFd
Pst.571243	IWB72742	G/A	1B	300.6	–0.74	4.58	5.36	15.39	0.21
Pst.571243	1B_338552631	T/G	1B	338.6	1.05	3.74	4.48	9.18	0.06
Pst.571243	IWB73197	T/G	2B	152.2	–0.61	3.72	4.45	10.76	0.24
Pst.140202	2D_82307885	G/A	2D	82.3	0.86	4.18	4.94	10.9	0.1
Pst.140202	3A_701489529	C/T	3A	701.5	–0.65	3.48	4.21	5.29	0.08
Pst.140202	3B_180646490	T/C	3B	180.6	–0.57	3.67	4.41	9.98	0.23
Pst.140202	IWB26725	G/A	3D	367.4	0.48	3.29	4.01	6.09	0.15
Pst.571262	IWB1577	T/C	3D	439.7	–0.45	5.01	5.81	8.53	0.5
Pst.571242	IWB24288	A/G	3D	447.1	0.4	4.57	5.35	8.95	0.39
Pst.571243	4A_659618327	T/C	4A	659.6	0.55	3.61	4.35	11.3	0.42
Pst.571242	4B_11905357	G/A	4B	11.9	0.48	6.88	7.74	11.93	0.3
Pst.571242	IWB5827	T/C	4B	603.1	–0.39	3.91	4.66	9.15	0.44
Pst.571243	4B_609362872	A/C	4B	609.4	–0.49	4.93	5.72	9.26	0.48
Pst.571242	5A_363980539	A/G	5A	364.0	–0.32	3.43	4.15	5.3	0.31
Pst.571242	5A_590355732	C/T	5A	590.4	–0.36	3.49	4.21	7.91	0.48
Pst.571242	IWB28556	A/G	5A	620.6	–0.37	3.61	4.35	7.13	0.31
Pst.140202	IWB27708	A/G	5B	2.3	–0.22	3.39	4.11	2.34	0.32
Pst.571242	IWA3089	C/T	5B	580.4	0.43	3.29	4.01	10.6	0.47
Pst.571242	5B_580647907	T/C	5B	580.6	–0.75	7.24	8.11	10.52	0.08
Pst.571243	5B_580647907	T/C	5B	580.6	–0.77	4.19	4.96	7.19	0.09
Pst.571243	IWB35933	C/T	5D	521.4	–0.62	3.4	4.12	8.94	0.22
Pst.173262	7A_529833812	G/C	7A	529.8	–0.2	3.06	3.76	7.6	0.16
Pst.571262	7A_696929784	G/T	7A	696.9	–0.84	3.44	4.17	6.95	0.06

^aResistance allele is underlined.

^bQTN effect is negative if minor allele is increasing phenotype and positive if major allele is increasing phenotype value.

^cPhenotypic variation explained by the QTN.

^dMinor allele frequency.