Table 3.
Summary of publicly available tools in computational histopathology.
| Tool Name | Language | View | Color Normalization | Segmentation | Diagnosis /Prognosis |
Link | Reference |
|---|---|---|---|---|---|---|---|
| Qupath | Java | √ | √ | √ | √ | https://qupath.github.io/ (accessed on 17 January 2022) | [123] |
| Cytomine | Java, web | √ | × | √ | √ | https://cytomine.be/ (accessed on 17 January 2022) | [128] |
| Orbit | Java, Scala, Python, R, and SQL | √ | √ | √ | √ | https://www.orbit.bio/ (accessed on 17 January 2022) | [124] |
| ASAP | Python | √ | × | × | × | https://computationalpathologygroup.github.io/ASAP/ (accessed on 17 January 2022) | \ |
| Openslide | C, Java | √ | √ | √ | √ | https://openslide.org/demo/ (accessed on 17 January 2022) | [126] |
| ImageJ | Java | √ | √ | √ | √ | https://imagej.net/plugins/slidej (accessed on 17 January 2022) | [127] |
| PMA.start | Web | √ | √ | √ | √ | https://free.pathomation.com/ (accessed on 17 January 2022) | \ |
| CellProfiler | Python | √ | √ | √ | √ | https://cellprofiler.org/ (accessed on 17 January 2022) | [125] |