Table 5.
Assessment of Sentosa® SQ HIV Genotyping Assay performance on intra-assay reproducibility.
| Sample | Viral Load (cp/mL) | Subtype | Mapped Reads | Coverage | No. Mismatches |
|---|---|---|---|---|---|
| P. 1_A | 928,859 | B | 158218 (99.46%) | PRO/RT: 7543 INT: 7743 | 0 |
| P. 1_B | 130509 (99.46%) | PRO/RT: 9511 INT: 3640 | |||
| P. 2_A | 66,857 | B | 69321 (99.48%) | PRO/RT: 4956 INT: 2629 | 2 |
| P. 2_B | 38263 (99.48%) | PRO/RT: 3165 a INT: 1570 | |||
| P. 3_A | 32,500 | G | 117138 (99.29%) | PRO/RT: 9553 INT: 4119 | 0 |
| P. 3_B | 174204 (99.38%) | PRO/RT: 13,870 INT: 6268 | |||
| P. 4_A | 14,900 | B | 121373 (99.47%) | PRO/RT: 8116 INT: 3746 | 0 |
| P. 4_B | 111858 (99.0%) | PRO/RT: 7262 INT: 3689 | |||
| P. 5_A | 737 | A1 | 33565 (98.92%) | PRO/RT: 106 b INT: 1697 | 1 |
| P. 5_B | 36386 (99.2%) | PRO/RT: 107 INT: 1774 | |||
| P. 6_A | 29,512 | C | 104346 (99.34%) | PRO/RT: 6518 INT: 5266 | 0 |
| P. 6_B | 77317 (99.61%) | PRO/RT: 4658 INT: 4034 | |||
| P. 7_A | 37,153 | C | 41770 (99.45%) | PRO/RT: 2920 INT: 2188 | 0 |
| P. 7_B | 29267 (99.34%) | PRO/RT: 2340 INT: 966 | |||
| P. 8_A | 112,202 | C | 64745 (99.66%) | PRO/RT: 4001 INT: 3925 | 0 |
| P. 8_B | 68129 (99.43%) | PRO/RT: 5364 INT: 3591 | |||
| P. 9_A | 144,544 | B | 132430 (99.59%) | PRO/RT: 10,017 INT: 6036 | 0 |
| P. 9_B | 79885 (99.75%) | PRO/RT: 4584 INT: 5027 |
a PRO codons 1–61, RT codons 208–386. b PRO codons 61–99, RT codons 1–324.