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. 2022 Mar 10;17(3):e0261710. doi: 10.1371/journal.pone.0261710

Table 4. Codon-anticodon recognition patterns and codon usage of the A. venetum chloroplast genome.

Amino Acid Codon Number RSCU* tRNA Amino Acid Codon Number RSCU* tRNA
Stop UAA 23 1.53 Met AUG 401 1 trnM-CAU
Stop UAG 9 0.6 Asn AAU 627 1.56
Stop UGA 13 0.87 Asn AAC 178 0.44
Ala GCU 459 1.78 Pro CCU 270 1.49
Ala GCC 174 0.67 Pro CCC 153 0.84
Ala GCA 281 1.09 Pro CCA 191 1.05 trnP-UGG
Ala GCG 118 0.46 Pro CCG 111 0.61
Cys UGU 128 1.44 Gln CAA 495 1.54 trnQ-UUG
Cys UGC 50 0.56 trnC-GCA Gln CAG 148 0.46
Asp GAU 578 1.59 Arg CGU 227 1.32 trnR-ACG
Asp GAC 147 0.41 trnD-GUC Arg CGC 78 0.45
Glu GAA 682 1.51 trnE-UUC Arg CGA 240 1.39
Glu GAG 220 0.49 Arg CGG 90 0.52
Phe UUU 611 1.28 Arg AGA 285 1.65 trnR-UCU
Phe UUC 343 0.72 trnF-GAA Arg AGG 115 0.67
Gly GGU 412 1.28 Ser UCU 366 1.67
Gly GGC 144 0.45 trnG-GCC Ser UCC 223 1.02 trnS-GGA
Gly GGA 474 1.48 Ser UCA 246 1.12 trnS-UGA
Gly GGG 253 0.79 Ser UCG 131 0.6
His CAU 315 1.45 Ser AGU 269 1.23
His CAC 120 0.55 trnH-GUG Ser AGC 81 0.37 trnS-GCU
Ile AUU 722 1.5 Thr ACU 353 1.63
Ile AUC 294 0.61 trnI-CAU Thr ACC 176 0.81 trnT-GGU
Ile AUA 431 0.89 Thr ACA 238 1.1 trnT-UGU
Lys AAA 594 1.49 Thr ACG 98 0.45
Lys AAG 204 0.51 Val GUU 361 1.49
Leu UUA 597 1.97 Val GUC 114 0.47 trnV-GAC
Leu UUG 365 1.21 trnL-CAA Val GUA 360 1.48
Leu CUU 388 1.28 Val GUG 135 0.56
Leu CUC 107 0.35 Trp UGG 319 1 trnW-CCA
Leu CUA 225 0.74 Tyr UAU 512 1.64
Leu CUG 132 0.44 Tyr UAC 114 0.36 trnY-GUA

RSCU *: relative synonymous codon usage.