Table 4. Codon-anticodon recognition patterns and codon usage of the A. venetum chloroplast genome.
Amino Acid | Codon | Number | RSCU* | tRNA | Amino Acid | Codon | Number | RSCU* | tRNA |
---|---|---|---|---|---|---|---|---|---|
Stop | UAA | 23 | 1.53 | Met | AUG | 401 | 1 | trnM-CAU | |
Stop | UAG | 9 | 0.6 | Asn | AAU | 627 | 1.56 | ||
Stop | UGA | 13 | 0.87 | Asn | AAC | 178 | 0.44 | ||
Ala | GCU | 459 | 1.78 | Pro | CCU | 270 | 1.49 | ||
Ala | GCC | 174 | 0.67 | Pro | CCC | 153 | 0.84 | ||
Ala | GCA | 281 | 1.09 | Pro | CCA | 191 | 1.05 | trnP-UGG | |
Ala | GCG | 118 | 0.46 | Pro | CCG | 111 | 0.61 | ||
Cys | UGU | 128 | 1.44 | Gln | CAA | 495 | 1.54 | trnQ-UUG | |
Cys | UGC | 50 | 0.56 | trnC-GCA | Gln | CAG | 148 | 0.46 | |
Asp | GAU | 578 | 1.59 | Arg | CGU | 227 | 1.32 | trnR-ACG | |
Asp | GAC | 147 | 0.41 | trnD-GUC | Arg | CGC | 78 | 0.45 | |
Glu | GAA | 682 | 1.51 | trnE-UUC | Arg | CGA | 240 | 1.39 | |
Glu | GAG | 220 | 0.49 | Arg | CGG | 90 | 0.52 | ||
Phe | UUU | 611 | 1.28 | Arg | AGA | 285 | 1.65 | trnR-UCU | |
Phe | UUC | 343 | 0.72 | trnF-GAA | Arg | AGG | 115 | 0.67 | |
Gly | GGU | 412 | 1.28 | Ser | UCU | 366 | 1.67 | ||
Gly | GGC | 144 | 0.45 | trnG-GCC | Ser | UCC | 223 | 1.02 | trnS-GGA |
Gly | GGA | 474 | 1.48 | Ser | UCA | 246 | 1.12 | trnS-UGA | |
Gly | GGG | 253 | 0.79 | Ser | UCG | 131 | 0.6 | ||
His | CAU | 315 | 1.45 | Ser | AGU | 269 | 1.23 | ||
His | CAC | 120 | 0.55 | trnH-GUG | Ser | AGC | 81 | 0.37 | trnS-GCU |
Ile | AUU | 722 | 1.5 | Thr | ACU | 353 | 1.63 | ||
Ile | AUC | 294 | 0.61 | trnI-CAU | Thr | ACC | 176 | 0.81 | trnT-GGU |
Ile | AUA | 431 | 0.89 | Thr | ACA | 238 | 1.1 | trnT-UGU | |
Lys | AAA | 594 | 1.49 | Thr | ACG | 98 | 0.45 | ||
Lys | AAG | 204 | 0.51 | Val | GUU | 361 | 1.49 | ||
Leu | UUA | 597 | 1.97 | Val | GUC | 114 | 0.47 | trnV-GAC | |
Leu | UUG | 365 | 1.21 | trnL-CAA | Val | GUA | 360 | 1.48 | |
Leu | CUU | 388 | 1.28 | Val | GUG | 135 | 0.56 | ||
Leu | CUC | 107 | 0.35 | Trp | UGG | 319 | 1 | trnW-CCA | |
Leu | CUA | 225 | 0.74 | Tyr | UAU | 512 | 1.64 | ||
Leu | CUG | 132 | 0.44 | Tyr | UAC | 114 | 0.36 | trnY-GUA |
RSCU *: relative synonymous codon usage.