Table 1.
Erm |
Erm |
Mph |
Mph |
|||
---|---|---|---|---|---|---|
Dataset |
Size (nt) |
Genes |
Families a,b |
Genes |
Families a,b |
Ref. |
Genomic | ||||||
NCBI RefSeq [15,438] |
6.21×1010 |
330 |
10/21 |
1107 |
13/59 |
[68] |
NCBI Assembly [412,184] |
1.71×1012 |
12423 |
29/314 |
14033 |
14/210 |
[69] |
Metagenomic | ||||||
HMP [757] |
4.69×1012 |
82 |
7/7 |
8 |
1/1 |
[42] |
Human gut 1 [170] |
1.93×1011 |
15 |
6/5 |
2 |
1/1 |
[44] |
Human gut 2 [114] |
1.32×1012 |
14 |
7/3 |
2 |
1/1 |
[43] |
Pig gut [295] |
1.74×1012 |
145 |
10/9 |
17 |
1/0 |
[45] |
Wild baboon gut [48] |
1.37×1011 |
0 |
0/0 |
0 |
0/0 |
[70] |
Wild rhino gut [17] |
6.21×1010 |
0 |
0/0 |
0 |
0/0 |
[71] |
WWTP [70] |
4.82×1011 |
49 |
6/35 |
8 |
4/4 |
[46] |
Pune river [62] |
3.91×1011 |
45 |
6/33 |
13 |
4/7 |
[47] |
Tara oceans [245] |
4.89×1012 |
2 |
0/2 |
1 |
0/1 |
[72] |
Antarctic soil [3] |
6.25×109 |
0 |
0/0 |
0 |
0/0 |
[73] |
Forest soil [36] |
1.99×1011 |
6 |
1/5 |
6 |
3/2 |
[48] |
Oilspill [13] |
2.75×1011 |
0 |
0/0 |
0 |
0/0 |
[74] |
Lake Hazen [8] |
2.75×1011 |
32 |
0/21 |
0 |
0/0 |
[49] |
Amazon river [106] |
2.88×1011 |
0 |
0/0 |
0 |
0/0 |
[75] |
Total |
1.67×1013 |
13143 |
30/392 c |
15197 |
14/227 c |
|
a, Amino acid identity <70%.
b, Known/new.
c, Non-redundant.
HMP, Human Microbiome Project; WWTP, Wastewater treatment plant.