Antibodies |
|
Normal rabbit IgG [Dilution (1:100)] |
Cell Signaling Technology |
2729S |
EPRS1, rabbit polyclonal [Dilution (1:100)] |
BioSynthesis |
N/A |
|
Chemicals, peptides, and recombinant proteins |
|
1 M Tris-HCl (pH-7.5) |
Boston BioProducts |
BBT-75 |
1 M Tris-HCl (pH-7.8) |
Boston BioProducts |
BBT-78 |
5 M NaCl |
Thermo Fisher Scientific |
Cat#24740011 |
Triton X-100 |
Sigma-Aldrich |
T8787 |
Bovine serum albumin |
Sigma-Aldrich |
A8806 |
Fetal Bovine Serum |
Gemini |
Cat#100-106 |
1 M HEPES (pH 7.8) |
Boston BioProducts |
BBH-78 |
1 M HEPES (pH 8.0) |
Boston BioProducts |
BBH-80 |
1 M MgCl2
|
Alfa Aesar |
J61014 |
Dithiothreitol |
Sigma-Aldrich |
Cat#10708984001 |
Disuccinimidyl sulfoxide (DSSO) |
Thermo Fisher Scientific |
A33545 |
Dimethyl sulfoxide (DMSO) |
Sigma-Aldrich |
D8418 |
Ammonium bicarbonate |
Sigma-Aldrich |
A6141 |
Protease inhibitor |
Thermo Fisher Scientific |
78429 |
Acetic acid |
Fisher Chemical |
A113-50 |
Formic acid |
Fisher Chemical |
A117-50 |
Acetonitrile |
Fisher Chemical |
A955-4 |
Sequencing Grade Modified Trypsin |
Promega |
V5111 |
HBSS |
Corning |
T55-022-PB |
Trypsin for cell culture |
Caisson |
T019 |
EDTA |
Sigma-Aldrich |
E6511 |
Sodium bicarbonate |
Sigma-Aldrich |
S6014 |
Phenol red |
Caisson |
P024 |
Penicillin |
Sigma-Aldrich |
P3032-100MU |
Streptomycin |
Gibco |
11860-038 |
L-Glutamine |
Caisson |
G010 |
DMEM base powder |
Caisson |
DMP08 |
PBS base powder |
Gibco |
21600-044 |
12N HCl |
Fisher Scientific |
A144-212 |
|
Experimental models: Cell lines |
|
Human: HEK293T |
ATCC |
CRL-3216 |
|
Critical commercial assays |
|
Protein A/G magnetic beads |
Thermo Fisher Scientific |
Cat#88803 |
C18 spin columns |
Thermo Fisher Scientific |
Cat#89873 |
Mini Kleenpak |
Pall |
KA02DJLP2S |
Supor DCF |
Pall |
CFS91SSPZK |
Acropak 500 |
Pall |
Cat#12995 |
MILLEX GP |
Millipore |
SLGP033RS |
|
Software and algorithms |
|
Proteome Discoverer |
Thermo Fisher Scientific |
https://planetorbitrap.com/proteome-discoverer |
XlinkX |
Thermo Fisher Scientific |
https://www.hecklab.com/software/xlinkx/ |
PyMol |
Schrödinger |
https://pymol.org/2/ |
Swiss-Model |
Protein Structure and Bioinformatics group |
https://swissmodel.expasy.org/ |
PatchDock |
Wolfson Lab, Tel Aviv University |
https://bioinfo3d.cs.tau.ac.il/PatchDock/ |
|
Other |
|
Microcentrifuge |
Eppendorf |
5424R |
Minicentrifuge |
Benchmark |
C1008 |
Thermomixer |
Eppendorf |
Cat#4376600 |
DynaMag-2 magnet |
Thermo Fisher Scientific |
12321D |
Plate reader |
Molecular Devices |
SpectraMax 190 |
Mass spectrometer |
Thermo Fisher Scientific |
Fusion Lumos |
NanoHPLC Pump: NCS-3500RS Nano ProFlow |
Thermo Fisher Scientific |
5041.0010A |
NanoHPLC Autosampler: WPS-3000TPL RS |
Thermo Fisher Scientific |
5826.0020 |
NanoHPLC Degasser: SRD-3400 |
Thermo Fisher Scientific |
5035.9245 |
Trapping column |
Thermo Fisher Scientific |
Cat#164564 |
Analytical column |
Thermo Fisher Scientific |
Cat#164940 |