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. 2022 Mar 9;3(1):101201. doi: 10.1016/j.xpro.2022.101201
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Normal rabbit IgG [Dilution (1:100)] Cell Signaling Technology 2729S
EPRS1, rabbit polyclonal [Dilution (1:100)] BioSynthesis N/A

Chemicals, peptides, and recombinant proteins

1 M Tris-HCl (pH-7.5) Boston BioProducts BBT-75
1 M Tris-HCl (pH-7.8) Boston BioProducts BBT-78
5 M NaCl Thermo Fisher Scientific Cat#24740011
Triton X-100 Sigma-Aldrich T8787
Bovine serum albumin Sigma-Aldrich A8806
Fetal Bovine Serum Gemini Cat#100-106
1 M HEPES (pH 7.8) Boston BioProducts BBH-78
1 M HEPES (pH 8.0) Boston BioProducts BBH-80
1 M MgCl2 Alfa Aesar J61014
Dithiothreitol Sigma-Aldrich Cat#10708984001
Disuccinimidyl sulfoxide (DSSO) Thermo Fisher Scientific A33545
Dimethyl sulfoxide (DMSO) Sigma-Aldrich D8418
Ammonium bicarbonate Sigma-Aldrich A6141
Protease inhibitor Thermo Fisher Scientific 78429
Acetic acid Fisher Chemical A113-50
Formic acid Fisher Chemical A117-50
Acetonitrile Fisher Chemical A955-4
Sequencing Grade Modified Trypsin Promega V5111
HBSS Corning T55-022-PB
Trypsin for cell culture Caisson T019
EDTA Sigma-Aldrich E6511
Sodium bicarbonate Sigma-Aldrich S6014
Phenol red Caisson P024
Penicillin Sigma-Aldrich P3032-100MU
Streptomycin Gibco 11860-038
L-Glutamine Caisson G010
DMEM base powder Caisson DMP08
PBS base powder Gibco 21600-044
12N HCl Fisher Scientific A144-212

Experimental models: Cell lines

Human: HEK293T ATCC CRL-3216

Critical commercial assays

Protein A/G magnetic beads Thermo Fisher Scientific Cat#88803
C18 spin columns Thermo Fisher Scientific Cat#89873
Mini Kleenpak Pall KA02DJLP2S
Supor DCF Pall CFS91SSPZK
Acropak 500 Pall Cat#12995
MILLEX GP Millipore SLGP033RS

Software and algorithms

Proteome Discoverer Thermo Fisher Scientific https://planetorbitrap.com/proteome-discoverer
XlinkX Thermo Fisher Scientific https://www.hecklab.com/software/xlinkx/
PyMol Schrödinger https://pymol.org/2/
Swiss-Model Protein Structure and Bioinformatics group https://swissmodel.expasy.org/
PatchDock Wolfson Lab, Tel Aviv University https://bioinfo3d.cs.tau.ac.il/PatchDock/

Other

Microcentrifuge Eppendorf 5424R
Minicentrifuge Benchmark C1008
Thermomixer Eppendorf Cat#4376600
DynaMag-2 magnet Thermo Fisher Scientific 12321D
Plate reader Molecular Devices SpectraMax 190
Mass spectrometer Thermo Fisher Scientific Fusion Lumos
NanoHPLC Pump: NCS-3500RS Nano ProFlow Thermo Fisher Scientific 5041.0010A
NanoHPLC Autosampler: WPS-3000TPL RS Thermo Fisher Scientific 5826.0020
NanoHPLC Degasser: SRD-3400 Thermo Fisher Scientific 5035.9245
Trapping column Thermo Fisher Scientific Cat#164564
Analytical column Thermo Fisher Scientific Cat#164940