Table 4.
Type and number of transcription factors (TFs) of P. cyrtonema
| TF_family | Number of unigenes | Up-regulated unigenes | Down-regulated unigenes |
|---|---|---|---|
| AP2/ERF-AP2 | 10 | 5 | 0 |
| AP2/ERF-ERF | 107 | 26 | 12 |
| AP2/ERF-RAV | 3 | 0 | 2 |
| Alfin-like | 4 | 0 | 0 |
| B3 | 42 | 5 | 4 |
| B3-ARF | 19 | 1 | 0 |
| BBR-BPC | 5 | 0 | 0 |
| BES1 | 8 | 1 | 0 |
| C2C2-CO-like | 6 | 2 | 0 |
| C2C2-Dof | 26 | 9 | 1 |
| C2C2-GATA | 24 | 5 | 3 |
| C2C2-LSD | 5 | 1 | 0 |
| C2C2-YABBY | 6 | 4 | 1 |
| C2H2 | 84 | 13 | 6 |
| C3H | 79 | 8 | 1 |
| CAMTA | 2 | 0 | 0 |
| CPP | 4 | 0 | 0 |
| CSD | 3 | 0 | 0 |
| DBB | 4 | 0 | 0 |
| DBP | 3 | 1 | 0 |
| E2F-DP | 8 | 0 | 0 |
| EIL | 3 | 0 | 0 |
| FAR1 | 64 | 2 | 5 |
| GARP-ARR-B | 7 | 1 | 0 |
| GARP-G2-like | 46 | 6 | 4 |
| GRAS | 33 | 8 | 1 |
| GRF | 11 | 4 | 1 |
| GeBP | 16 | 2 | 1 |
| HB-BELL | 12 | 4 | 0 |
| HB-HD-ZIP | 25 | 6 | 0 |
| HB-KNOX | 8 | 3 | 0 |
| HB-PHD | 2 | 0 | 0 |
| HB-WOX | 6 | 1 | 1 |
| HB-other | 23 | 1 | 1 |
| HRT | 1 | 0 | 0 |
| HSF | 35 | 6 | 8 |
| LIM | 3 | 0 | 0 |
| LOB | 17 | 3 | 0 |
| MADS-M-type | 23 | 0 | 0 |
| MADS-MIKC | 12 | 6 | 1 |
| MYB | 67 | 19 | 4 |
| MYB-related | 76 | 9 | 6 |
| NAC | 89 | 10 | 17 |
| NF-X1 | 3 | 1 | 0 |
| NF-YA | 8 | 0 | 1 |
| NF-YB | 11 | 4 | 1 |
| NF-YC | 9 | 1 | 0 |
| OFP | 12 | 7 | 0 |
| PLATZ | 13 | 2 | 1 |
| RWP-RK | 8 | 0 | 0 |
| S1Fa-like | 4 | 0 | 0 |
| SAP | 1 | 0 | 1 |
| SBP | 22 | 7 | 1 |
| SRS | 5 | 0 | 0 |
| STAT | 1 | 0 | 0 |
| TCP | 24 | 7 | 1 |
| TUB | 21 | 1 | 0 |
| Tify | 25 | 2 | 3 |
| Trihelix | 25 | 1 | 2 |
| ULT | 1 | 0 | 0 |
| VOZ | 1 | 0 | 0 |
| WRKY | 106 | 5 | 31 |
| Whirly | 5 | 1 | 0 |
| bHLH | 85 | 18 | 9 |
| bZIP | 58 | 11 | 4 |
| zf-HD | 9 | 4 | 0 |
| zn-clus | 4 | 1 | 0 |