REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Chemicals, Peptides, and Recombinant Proteins | ||
Human DNA-PKcs (full-length) | This paper | Residues 1–4128 |
Human Ku70/80 | This paper | Residues 1–609 and 1–732 |
Human Artemis | This paper | Residues 1–692 |
Deposited Data | ||
DNA-PK-Artemis complex, cryoEM (3.0 Å) | This paper | PDB: 7SGL EMDB: EMD-25113 |
FATKIN domain of DNA-PK-Artemis (2.7 Å) | This paper | EMDB: EMD-25114 |
DNA-Artemis-Ku-N-heat of DNA-PK-Artemis (2.9 Å) | This paper | EMDB: EMD-25115 |
DNA-PK-DNA complex VII, cryoEM (3.3 Å) | This paper | PDB: 7SU3 EMDB: EMD-25439 |
DNA-PK-DNA complex VIII, cryoEM (3.6 Å) | This paper | PDB: 7SUD EMDB: EMD-25440 |
DNA-PK-DNA complex VIIa, cryoEM (4.2 Å) | This paper | EMDB: EMD-25112 |
DNA-PK-DNA complex VIIb, cryoEM (4.2 Å) | This paper | EMDB: EMD-25111 |
DNA-PK-DNA complex VIb, cryoEM (4.4 Å) | This paper | EMDB: EMD-25110 |
Original gel scans | Mendeley Data | http://dx.doi.org/10.17632/t3525wy6gk.1 |
Experimental Models: Cell Lines | ||
HeLa-S3 cells | National Cell Culture Center | https://cellculturecompany.com/national-cell-culture-center/ |
HEK293T cells | ATCC | CRL-3216 |
DNA-PKcs deficient V3 cells | Katheryn Meek’s lab | N/A |
Oligonucleotides | ||
See DNA preparation in Table S2 | This paper | N/A |
Recombinant DNA | ||
Ku70 in pLEXm plasmid | This paper | pWY2799 |
Ku80 in pLEXm plasmid | This paper | pWY2802 |
Artemis in pLEXm plasmid | This paper | pWY2332 |
Software and Algorithms | ||
PyMol | Schrodinger | https://pymol.org/2/ |
Prism-8 | GraphPad Software | https://www.graphpad.com/ |
CCP4 | CCP4 | http://www.ccp4.ac.uk |
PHENIX | (Adams et al., 2010) | https://www.phenix-online.org |
COOT | (Emsley, 2010) | https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/ |
UCSF Chimera | (Pettersen et al., 2004) | https://www.cgl.ucsf.edu/chimera/ |
cryoSPARC | (Punjani et al., 2017) | https://cryosparc.com/ |
RELION | (Scheres, 2012); (Fernandez-Leiro and Scheres, 2017) | https://www2.mrc-lmb.cam.ac.uk/relion |
SerialEM | (Mastronarde, 2005) | https://bio3d.colorado.edu/SerialEM/ |