Table 2. Basic characteristics of IER3 expression.
GEO platform | Data source | HCC tissue | Non-HCC tissue | p-value | ||||
---|---|---|---|---|---|---|---|---|
Number | Mean | SD | Number | Mean | SD | |||
GPL5175 | GSE12941, GSE84005 | 48 | 3.04 | 0.13 | 48 | 3.05 | 0.12 | 0.724 |
GPL6244 | GSE45050, GSE64041 | 68 | 3.99 | 0.25 | 73 | 3.90 | 0.25 | 0.027 |
GPL6480 | GSE117361, GSE54236 | 160 | 3.49 | 0.14 | 5 | 3.46 | 0.11 | 0.644 |
GPL11154 | GSE63863, GSE65485, GSE73708, GSE81550, GSE87592, GSE174608, GSE114564, GSE148355, GSE69164 | 195 | 2.99 | 0.89 | 150 | 2.94 | 0.54 | 0.556 |
GPL16791 | GSE104310, GSE63018, GSE77509, GSE94660, GSE97214, GSE112221 | 95 | 6.26 | 0.89 | 77 | 6.05 | 0.88 | 0.124 |
GPL21047 | GSE101728, GSE98269 | 10 | 3.68 | 0.12 | 10 | 3.67 | 0.11 | 0.921 |
GPL5474 | GSE10143 | 80 | 13.76 | 0.73 | 307 | 12.41 | 0.86 | <0.001 |
GPL3921 | GSE14520 | 229 | 3.03 | 0.22 | 216 | 3.04 | 0.24 | 0.725 |
GPL10999 | GSE33294 | 3 | 4.88 | 1.64 | 3 | 3.74 | 0.54 | 0.317 |
GPL4133 | GSE46408 | 6 | 11.50 | 1.02 | 6 | 10.28 | 1.09 | 0.073 |
GPL13369 | GSE46444 | 88 | 10.34 | 1.62 | 48 | 10.36 | 1.61 | 0.939 |
GPL16699 | GSE57555 | 5 | 0.03 | 0.18 | 5 | –0.07 | 0.05 | 0.273 |
GPL96 | GSE60502 | 18 | 10.46 | 1.35 | 18 | 10.17 | 0.77 | 0.427 |
GPL20301 | GSE125469 | 3 | 6.90 | 0.69 | 3 | 5.98 | 0.55 | 0.143 |
GPL18573 | GSE128274 | 4 | 4.24 | 0.93 | 4 | 4.21 | 0.99 | 0.964 |
GPL23126 | GSE166163 | 3 | 6.30 | 0.56 | 3 | 6.09 | 1.73 | 0.845 |
TGCA-GTEx | – | 374 | 5.59 | 1.49 | 160 | 5.58 | 0.95 | 0.945 |
In-house IHC | – | 94 | 10.64 | 2.08 | 127 | 6.50 | 2.73 | <0.001 |
Notes.
- HCC
- hepatocellular carcinoma
- IER3
- immediate early response 3
- IHC
- immunohistochemistry
- TCGA
- The Cancer Genome Atlas
- GTEx
- Genotype-Tissue Expression
- SD
- standard deviation