Table 2.
Evaluation of predicted structural models. The model based on template-based prediction was calculated. Ramachandran plots showed several disallowed residues in RhoGAP and HsSYDE2 C2 domain except HsSYDE1 C2 domain with completely favored score in all the predicted region. Each predicted model showed high score in overall quality factor for non-bonded atomic interactions by ERRAT.
HsSYDE1 RhoGAP (5c2k) | HsSYDE1 C2 (1djx) | HsSYDE2 RhoGAP (5c2k) | HsSYDE2 C2 (5iz5) | DmSyd1 RhoGAP (3cxl) | |
---|---|---|---|---|---|
Ramachandran Plots (favored) | 98.2% | 100% | 97.8% | 98.2% | 98.3% |
Ramachandran Plots (disallowed) | 0.6% | 0.0% | 0.5% | 0.9% | 0.6% |
ERRAT (overall quality factor) | 94.09 | 77.10 | 98.96 | 82.69 | 92.67 |