Table 2.
The interactions between the peptide and the PBG of pSLA-1*13:01RW12.
Complex | Hydrogen bonds and salt bridges | van der Waals contactresidues | |||
---|---|---|---|---|---|
Peptide | Heavy Chain | ||||
Residue | Atom | Residue | Atom | ||
pSLA-1*13:01RW12 | P-1-Arg | NH1 | Glu55 | OE2 | Glu55, Tyr59, Glu62, Glu63, Leu163, Glu166, Ser167, Arg170, Tyr171 |
N | Glu62 | OE2 | |||
Glu63 | OE1 | ||||
O | Ser167 | OG | |||
P1-Val | N | Glu63 | OE2 | Leu5, Tyr7, Phe33, Tyr59, Glu63, Tyr159, Leu163, Ser167, Tyr171 | |
O | Tyr159 | OH | |||
P2-Glu | OE1 | Tyr7 | OH | Tyr7, Tyr9, Met45, Glu63, Lys66, Val67, Asn70, Phe99, Tyr159 | |
OE2 | Tyr9 | OH | |||
N | Glu63 | OE2 | |||
O | Lys66 | NZ | |||
P3-Asp | OD2 | Arg156 | NE | Asn70, Phe99, Arg114, Arg156, Tyr159 | |
P4-Val | Arg65, Lys66 | ||||
P5-Thr | OG1 | Asp69 | OD1 | Asp69, Asn70, Arg155, Arg156 | |
Asn70 | OD2 | ||||
P6-Asn | Arg65, Asp69 | ||||
P7-Thr | OG1 | Arg155 | NH1 | Arg155, Arg156 | |
P8-Ala | Arg156 | ||||
P9-Glu | Thr73, Val76, Gly77, Thr80 | ||||
P10-Tyr | Thr143, Lys146, Trp147, Ala150, Val152 | ||||
P11-Trp | O | Tyr84 | OH | Thr73, Tyr74, Gly77, Thr80, Lue81, Tyr84, Leu95, Ser97, Arg114, Asp116, Thr143, Lys146, Trp147 | |
Lys146 | NZ | ||||
NE1 | Asp116 | OD2 |