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. 2022 Feb 28;13:820881. doi: 10.3389/fimmu.2022.820881

Table 2.

The interactions between the peptide and the PBG of pSLA-1*13:01RW12.

Complex Hydrogen bonds and salt bridges van der Waals contactresidues
Peptide Heavy Chain
Residue Atom Residue Atom
pSLA-1*13:01RW12 P-1-Arg NH1 Glu55 OE2 Glu55, Tyr59, Glu62, Glu63, Leu163, Glu166, Ser167, Arg170, Tyr171
N Glu62 OE2
Glu63 OE1
O Ser167 OG
P1-Val N Glu63 OE2 Leu5, Tyr7, Phe33, Tyr59, Glu63, Tyr159, Leu163, Ser167, Tyr171
O Tyr159 OH
P2-Glu OE1 Tyr7 OH Tyr7, Tyr9, Met45, Glu63, Lys66, Val67, Asn70, Phe99, Tyr159
OE2 Tyr9 OH
N Glu63 OE2
O Lys66 NZ
P3-Asp OD2 Arg156 NE Asn70, Phe99, Arg114, Arg156, Tyr159
P4-Val Arg65, Lys66
P5-Thr OG1 Asp69 OD1 Asp69, Asn70, Arg155, Arg156
Asn70 OD2
P6-Asn Arg65, Asp69
P7-Thr OG1 Arg155 NH1 Arg155, Arg156
P8-Ala Arg156
P9-Glu Thr73, Val76, Gly77, Thr80
P10-Tyr Thr143, Lys146, Trp147, Ala150, Val152
P11-Trp O Tyr84 OH Thr73, Tyr74, Gly77, Thr80, Lue81, Tyr84, Leu95, Ser97, Arg114, Asp116, Thr143, Lys146, Trp147
Lys146 NZ
NE1 Asp116 OD2