Table 2.
Copy number variation segments identified in gastric cancer patients
|
Chrom
|
Loc.start
|
Loc.end
|
Seg.mean
|
LogP
|
Key genes
|
| Chr04 | 0 | 190800000 | -1.63 | -100.00 | FHIT |
| Chr05 | 45800000 | 131000000 | -1.49 | -100.00 | |
| Chr13 | 19000000 | 110000000 | 0.87 | -88.38 | |
| Chr18 | 30800000 | 77800000 | -1.86 | -86.67 | |
| Chr03 | 0 | 66200000 | -1.23 | -80.98 | |
| Chr07 | 0 | 55600000 | 1.28 | -75.03 | EGFR |
| Chr20 | 30200000 | 62800000 | 2.54 | -74.06 | |
| Chr16 | 0 | 76200000 | -0.93 | -67.73 | |
| Chr08 | 90600000 | 122000000 | 1.84 | -59.87 | |
| Chr05 | 0 | 45600000 | 1.29 | -56.55 | TERT |
| Chr01 | 170000000 | 240000000 | 0.78 | -55.86 | |
| Chr21 | 9400000 | 47800000 | -1.33 | -54.61 | |
| Chr09 | 0 | 29800000 | -1.56 | -50.52 | CDKN2A |
| Chr08 | 47800000 | 90400000 | 1.02 | -49.62 | |
| Chr08 | 122200000 | 146000000 | 2.42 | -49.24 | MYC |
| Chr01 | 29600000 | 98400000 | -0.69 | -47.14 | |
| Chr19 | 0 | 28800000 | -2.03 | -43.15 | |
| Chr10 | 50800000 | 111400000 | -0.77 | -41.27 | |
| Chr03 | 165800000 | 197800000 | 1.19 | -40.36 | |
| Chr22 | 16000000 | 51000000 | -1.11 | -38.57 | |
| Chr14 | 19000000 | 107000000 | -0.57 | -37.54 | |
| Chr12 | 107600000 | 133600000 | -1.44 | -36.53 | |
| Chr15 | 20000000 | 88200000 | -0.60 | -34.61 | |
| Chr01 | 151200000 | 169800000 | 1.47 | -32.21 | |
| Chr17 | 0 | 21800000 | -1.75 | -31.78 | TP53 |
| Chr03 | 96200000 | 165600000 | 0.48 | -30.10 | |
| Chr19 | 32200000 | 58800000 | -1.15 | -29.94 | |
| Chr07 | 76400000 | 117800000 | 0.66 | -28.48 | |
| Chr05 | 131200000 | 180600000 | -0.70 | -28.10 | |
| Chr17 | 49200000 | 80800000 | -0.85 | -26.77 | |
| Chr06 | 26000000 | 57000000 | 0.80 | -25.75 | |
| Chr12 | 73400000 | 107400000 | -0.64 | -23.98 | |
| Chr06 | 57200000 | 104200000 | -0.63 | -22.49 | |
| Chr20 | 0 | 17000000 | 1.09 | -22.19 | |
| Chr20 | 17200000 | 30000000 | 1.73 | -18.89 | |
| Chr01 | 98600000 | 109600000 | -1.31 | -18.38 | |
| Chr11 | 67000000 | 96000000 | 0.58 | -17.22 | |
| Chr08 | 20200000 | 47600000 | -0.82 | -16.59 | |
| Chr03 | 66400000 | 96000000 | -0.54 | -16.41 | |
| Chr01 | 19800000 | 29400000 | -1.60 | -15.48 | |
| Chr02 | 92200000 | 122200000 | 0.51 | -14.89 | |
| Chr11 | 37000000 | 66800000 | -0.69 | -14.39 | |
| Chr02 | 153200000 | 193600000 | 0.37 | -14.32 | |
| Chr09 | 30000000 | 115400000 | -0.36 | -13.72 | |
| Chr01 | 0 | 19600000 | -0.77 | -12.44 | |
| Chr10 | 200000 | 5600000 | 1.32 | -10.20 | |
| Chr02 | 62400000 | 76000000 | 0.58 | -9.30 | |
| Chr12 | 7400000 | 31200000 | -0.40 | -9.25 | |
| Chr13 | 110200000 | 113800000 | 3.69 | -8.57 | |
| Chr06 | 104400000 | 170800000 | 0.24 | -8.31 | |
| hr18 | 23000000 | 30600000 | -0.85 | -7.70 | |
| Chr12 | 31400000 | 38200000 | -1.65 | -7.02 | |
| Chr15 | 88400000 | 95200000 | 0.80 | -6.84 | |
| Chr16 | 76400000 | 90000000 | -0.45 | -6.61 | |
| Chr12 | 52200000 | 58200000 | 0.72 | -6.00 | |
| Chr19 | 29000000 | 32000000 | 1.50 | -6.00 | |
| Chr08 | 0 | 6200000 | -0.65 | -5.82 | |
| Chr10 | 123000000 | 126800000 | 1.09 | -5.72 | |
| Chr11 | 96200000 | 134800000 | -0.26 | -5.51 | |
| Chr17 | 37600000 | 39600000 | 4.54 | -5.50 | |
| Chr02 | 122400000 | 153000000 | -0.28 | -5.38 | |
| Chr07 | 55800000 | 76200000 | -0.63 | -5.35 | |
| Chr15 | 99200000 | 102200000 | 1.24 | -5.04 | |
| Chr11 | 0 | 4000000 | -1.16 | -4.92 | |
| Chr12 | 38400000 | 52000000 | -0.46 | -4.85 | |
| Chr01 | 109800000 | 119800000 | -0.44 | -4.03 | |
| Chr01 | 120000000 | 151000000 | 0.52 | -4.01 | |
| Chr07 | 118000000 | 158800000 | -0.21 | -3.77 | |
| Chr17 | 22000000 | 37400000 | 0.44 | -3.48 | |
| Chr08 | 6400000 | 20000000 | 0.27 | -3.01 |