Antibodies |
|
Rabbit anti-DOT1L/KMT4 |
Abclonal |
Cat#A12329; RRID:AB_2861655 |
Rabbit anti-β-tubulin |
Cell Signaling Technology |
Cat#2146; RRID:AB_2210545 |
Rabbit anti-HA tag |
Cell Signaling Technology |
Cat#3724; RRID:AB_1549585 |
Rabbit anti-Histone H3 |
Cell Signaling Technology |
Cat#9715; RRID:AB_331563 |
Rabbit anti-H3K79me2 |
Millipore |
Cat#04–835; RRID:AB_1587126 |
|
Bacterial and virus strains |
|
E. coli BL21(DE3)pLysS |
Novagen |
Cat#69388–3 |
E. coli B834(DE3)pLysS |
Novagen |
Cat#69042–3 |
E. coli HB101 |
ATCC |
Cat#67593 |
|
Chemicals, peptides, and recombinant proteins |
|
Atto647N maleimide |
Sigma |
Cat#05316 |
AlexaFluor488 maleimide |
Fisher |
Cat#A10254 |
TALON Metal Affinity Resin |
Clontech |
Cat.#635669 |
Source S resin |
GE Healthcare |
Cat.#17094405 |
Source Q resin |
GE Healthcare |
Cat.#17094705 |
|
Experimental models: Cell lines |
|
MV4;11 |
ATCC; gifts from gift from Drs. Xiaobing Shi and Hong Wen; Wan et al. (2017)
|
Cat#CRL-9591 |
|
Oligonucleotides |
|
smFRET nucleosome oligonucleotides (for oligonucleotides used to prepare nucleosomes for smFRET, see Table S1) |
This study |
N/A |
RT-qPCR primers (for RT-qPCR primers, see Table S3) |
This study |
N/A |
|
Recombinant DNA |
|
Plasmid expressing DOT1Lcat |
Anderson et al. (2019)
|
pST50Tr-STRaHISNhDot1t1x1 |
Plasmid expressing DOT1L(1–332) |
This study |
pST50Tr-STRaHISNhDot1t3 |
Plasmid expressing DOT1Lcat(R282A) |
Anderson et al. (2019)
|
pST50Tr-STRaHISNhDot1t1x4 |
Plasmid expressing DOT1Lcat(F326A) |
Anderson et al. (2019)
|
pST50Tr-STRaHISNhDot1t1x6 |
Plasmid expressing DOT1Lcat(K330A) |
Anderson et al. (2019)
|
pST50Tr-STRaHISNhDot1t1x5 |
Plasmid expressing DOT1Lcat(C45A, C75A, C179A, N324C) |
This study |
pST50Tr-STRaHISNhDot1t1x30 |
Plasmid expressing DOT1Lcat(R282E, C45A, C75A, C179A, N324C) |
This study |
pST50Tr-STRaHISNhDot1t1x33 |
Plasmid expressing DOT1Lcat(F326A, C45A, C75A, C179A, N324C) |
This study |
pST50Tr-STRaHISNhDot1t1x31 |
Plasmid expressing DOT1L(1–332, C45A, C75A, C179A, N324C) |
This study |
pST50Tr-STRaHISNhDot1t3x30 |
Plasmid expressing DOT1Lcat(C45A, C75A, C179A, E69C) |
This study |
pST50Tr-STRaHISNhDot1t1x26 |
Plasmid expressing DOT1Lcat(R282E, C45A, C75A, C179A, E69C) |
This study |
pST50Tr-STRaHISNhDot1t1x37 |
Plasmid expressing DOT1Lcat(F326A, C45A, C75A, C179A, E69C) |
This study |
pST50Tr-STRaHISNhDot1t1x39 |
Plasmid expressing DOT1Lcat(G163R, G165R, C45A, C75A, C179A, E69C) |
This study |
pST50Tr-STRaHISNhDot1t1x38 |
Plasmid expressing DOT1L(1–332, C45A, C75A, C179A, E69C) |
This study |
pST50Tr-STRaHISNhDot1t3x26 |
Plasmid expressing H2A(L65C) |
This study |
pST50Trc4-hH2A.Dx11 |
Plasmid expressing H3(K79M) |
This study |
pST50Tr-hH3.2x26 |
Lentiviral plasmid expressing DOT1L-targeted sgRNA |
This study |
LRG2.1-sgDOT1L |
Retroviral plasmid expression murine Dot1L |
This study |
pMSCVneo-KHAmDot1L |
Retroviral plasmid expression murine Dot1L(R282A) |
This study |
pMSCVneo-KHAmDot1Lx1 |
Retroviral plasmid expression murine Dot1L(R282E) |
This study |
pMSCVneo-KHAmDot1Lx2 |
Retroviral plasmid expression murine Dot1L(F326A) |
This study |
pMSCVneo-KHAmDot1Lx4 |
Retroviral plasmid expression murine Dot1L(I290A) |
This study |
pMSCVneo-KHAmDot1Lx5 |
Retroviral plasmid expression murine Dot1L(K330A) |
This study |
pMSCVneo-KHAmDot1Lx9 |
Retroviral plasmid expression murine Dot1L(G163R/G165R) |
This study |
pMSCVneo-KKHAmDot1Lx7 |
|
Software and algorithms |
|
Microsoft Excel |
Microsoft |
https://products.office.com/en-us/excel
|
ImageJ |
NIH |
https://imagej.nih.gov/ij/
|
Matlab R2021a |
Mathworks |
https://www.mathworks.com
|