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. 2022 Feb 16;14(3):evac013. doi: 10.1093/gbe/evac013

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© The Author(s) 2022. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Fig. 2. — Champagne correctly reconstructs primate phylogeny, finding evidence for human–chimp–gorilla ILS. (A) At each node in the tree, we depict the number of indels identified by Champagne that support the corresponding clade. (B) Champagne finds 93, 67, and 35 indels supporting gorilla, human, and chimpanzee as outgroup to the other two species, suggesting a prevalence of ILS and possible introgression at this node. (C) A multiple sequence alignment for an 87-bp deletion shared uniquely by human and chimpanzee.