Table 7.
Runtime and peak memory consumption. Runtime and peak memory consumption for each tool running on a virtual machine with either 1 or 10 CPU cores and processing one library of the self-generated E. coli dataset. *The smORFer runtime and memory does not include the resources required to manually create a calibrated bam file
| Time [s] | Memory [MB] | |||
|---|---|---|---|---|
| Tools / threads | 1 | 10 | 1 | 10 |
| REPARATION_blast | 8528 | 1332 | 6412 | 6796 |
| Ribo-TISH | 482 | 62 | 137 | 137 |
| DeepRibo | 2145 | 1079 | 3921 | 3901 |
| IRSOM | 87 | — | 853 | — |
| SPECtre | 3871 | 3894 | 1535 | 1534 |
| smORFer* | 12 934 | — | 11 995 | — |
| PRICE | 1851 | 590 | 8604 | 8657 |
| ribotricer | 152 | — | 653 | — |