Table 9. Quantitative reverse transcription-PCR (qRT-PCR) cycling conditions for detection of SARS-CoV-2 RNA using four assays.
Step | Berlin Charité (E, N and
RdRP) |
EVAg (E and RdRp) | BGI
(ORF1ab) |
DAAN
(ORF1ab and N) |
||
---|---|---|---|---|---|---|
QuantiFast
RT-PCR +R |
TaqMan
® Fast
Virus |
QuantiFast
RT-PCR +R |
TaqMan
® Fast
Virus |
Kit
component |
Kit
component |
|
Reverse transcription | 55°C | 50°C | 55°C | 50°C | 50°C | 50°C |
20 min | 5 min | 20 min | 5 min | 20 mins | 15 mins | |
Activation | 95°C | 95°C | 95°C | 95°C | 95°C | 95°C |
5 min | 20 sec | 5 min | 20 sec | 10 mins | 15 mins | |
Denaturation | 95°C | 95°C | 95°C
15 sec 45 cycles |
95°C | 95°C | 94°C |
15 sec | 3 sec | 3 sec | 15 sec | 15 sec | ||
45 cycles | 40 cycles | 40 cycles | 40 cycles | 45 cycles | ||
Annealing and
extension |
58°C | 60°C | 58°C | 58°C | 60°C | 55°C |
30 sec | 30 sec | 45 sec | 45 sec | 30 sec | 45 sec | |
45 cycles | 40 cycles | 40 cycles | 40 cycles | 40 cycles | 45 cycles |